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GT23764

CSHL Arabidopsis genetrap mutant lines

Original: GT23764

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23764

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2803545 [Map]; Strand: c
      • AT3G09140.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -750; Region: promoter
      • AT3G09140.2 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -750; Region: promoter
      • AT3G09150.2 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G09150.1 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: -52; Region: promoter
      • AT3G09150.3 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: -65; Region: promoter
    Flanking Genome Sequence: GT23764 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCG CGTTTGTCTC ACTGAACCTG 
    TGAGAATTTT ATCTCTTTTA TAGATAAAGA ATCTTGCTTT TTTCAGTTTT 
    CAGTATGAAG AAGAATTGAA GAGAGTGTCC GAGGAAGGAG ACCTTTGGTT 
    TTCAGTTTGT GAGTCTTGTT GTAATGGCTT TATCAATGGA GTTTGGGTTT 
    TCAATTGGGT CATGCTTCAA GGCACCAAAC CCACCTGTTC TAATCTCTGC 
    ACGCCCTAAT AAGATCAATT TCACGTTGAG AAGGAGAAAT AAAAGATTCT 
    TACTTAGAGT CTCTGCTGTG TCCTATAAGG AATTCGCAGA GTCTGCTTTA 
    GAAGAAACCA GGAAAAGGAT CGTTCTTGAA CCTTCACATC TCCGGGTATA 
    TGCAATTACA TTTCGTTAGT GTAGTGGGAG GATTATATTT ATCATTGTTT 
    CTTGCTGTGA ATTTTGGGTA AATTGATTTG AGTTGTCATT ACGAACCAAA 
    CAAATAACTT TACTGTTATA GACTGCTTAT ATAAGTAAAA GTTCAGATTT 
    TGTTTTTCTA ATCACGAAAC TGTTTCAGGA AAAGTATAGT AGCATGACAG 
    GACTAGATGG TAAGACCGAA CTTCAAATGC TTGCTTTTAA ATCTTCAAAG 
    ATTAGACTCT TGAGGAGTAT GGCAATAGAG AATGAGACAA TGCAGGTTTA 
    ACTTCAGCAG TACAAACTGA TT

AT3G09140.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 424 Blast hits to 257 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09140.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.1

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 403 Blast hits to 403 proteins in 61 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.2

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.3

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR