1. Home
  2. Mutant Lines
  3. GT23779

GT23779

CSHL Arabidopsis genetrap mutant lines

Original: GT23779

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23779

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4702444 [Map]; Strand: c
      • AT1G13700.1 - [+] show detail - 6-phosphogluconolactonase 1
        Distance: -6421; Region: intergenic
      • AT1G13710.1 - [+] show detail - cytochrome P450, family 78, subfamily A, polypeptide 5
        Distance: 281; Region: intergenic
    Flanking Genome Sequence: GT23779 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGTTAGATAT TTGGATCACG 
    TTGTTCAACA TGCTAACATT AACAAGTGAT CGTCCTATTG TCATATCATT 
    ACTCGGTTTC ATCTCACCCC ACAATAAACA ATTTTTTATC ACATTTTAAT 
    TACAAACCAA CAAAAAACAG AAGCTAAAAT GGCATTCGGG TTTTCGATTC 
    GACCCACTAG TTTATAAATA ACTTGAAAAT TCATATTTAG GCATAATTAC 
    TGATTAAAAT AAAGAGCGCG ATATTTGGAT AAGAAATATA GTAAGAGATT 
    TGCTTATTGC ATAAACTTAG CTAATCAATT TTATAGATAG AAAAACATTG 
    AAAAGCAAAC CGAGGGGATG CGATAACATC ATGAAGCATC ACAAAGCAAA 
    ATAGAAAACT TACACCAAAA CCCTAAAGAA GTTCGACCAA CGTGCCAAAA 
    CCCTAACTTC CTTCCCAGCC ATAATTATTA TTAATTTTAT TAATAAGTAC 
    TAGCCATACT TCATTAAACA AGTCCCCGAC ACGATAATCC ATCAAGCGAA 
    ACCAACATTC CTTGGAACAG CCTTGCACTT CAACGGATTC TTCATCTCAC 
    TCGACCAGAT AGAACCAATA CCCAACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20855586 [Map]; Strand: w
      • AT3G56210.5 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G56210.2 - [+] show detail - ARM repeat superfamily protein
        Distance: -38; Region: promoter
      • AT3G56210.4 - [+] show detail - ARM repeat superfamily protein
        Distance: -38; Region: promoter
      • AT3G56210.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -44; Region: promoter
    Flanking Genome Sequence: GT23779 - 5-prime edge 
    TTTAGTAATA GAAAAATAAA CTAGATTTCA GCTTAAGCAT TGGAGAAGAG 
    TTTTTTGATT GTTGAAAAAT AAAAAAACTT TGAGACTGGA TTGTTTAGTT 
    CAGGTAGAGT GAAGAACCTG GGCCTCATAG AGCCCGTAAA ATAGCTAATG 
    GGCCTTCTTG TGCTTTCATG TTGAAGATTA TATGGGCCCT GTATCTGTTT 
    ATCTTCATTT CCTTCATCTC ACTCGA

AT1G13700.1

Model type
Protein coding
Short Description
6-phosphogluconolactonase 1
Computational Description
6-phosphogluconolactonase 1 (PGL1); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1); Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0; Bacteria - 2521; Metazoa - 189; Fungi - 243; Plants - 155; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13710.1

Model type
Protein coding
Short Description
cytochrome P450, family 78, subfamily A, polypeptide 5
Curator Summary
Encodes the cytochrome P450 CYP78A5 monooxygenase. Contributes to the generation of a growth-stimulating signal distinct from the classical phytohormones that prevents proliferation arrest, promoting organ growth.
Computational Description
"cytochrome P450, family 78, subfamily A, polypeptide 5" (CYP78A5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 10 (TAIR:AT1G74110.1); Has 31179 Blast hits to 31066 proteins in 1571 species: Archae - 49; Bacteria - 2905; Metazoa - 11364; Fungi - 6716; Plants - 9120; Viruses - 3; Other Eukaryotes - 1022 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56210.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56210.2

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56210.4

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56210.5

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024).
Link
InterPro Scan - TAIR