1. Home
  2. Mutant Lines
  3. GT23791

GT23791

CSHL Arabidopsis genetrap mutant lines

Original: GT23791

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23791

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4702678 [Map]; Strand: c
      • AT1G13700.1 - [+] show detail - 6-phosphogluconolactonase 1
        Distance: -6655; Region: intergenic
      • AT1G13710.1 - [+] show detail - cytochrome P450, family 78, subfamily A, polypeptide 5
        Distance: 47; Region: intergenic
    Flanking Genome Sequence: GT23791 - 3-prime edge 
    TTTAGGCAGA ATTACTGATT AAAATAAAGA GCGCGATATT TGGATAAGAA 
    AGATAGTAAG AGATTTGCTT ATTGCATAAA CTTAGCTAAT CAATTTTATA 
    GATAGAAAAA CATTGAAAAG CAAACCGAGG GGATGCGATA ACATCATGAA 
    GCATCACAAA GCAAAATAGA AAACTTACAC CAAAACCCTA AAGAAGTTCG 
    ACCAACGTGC CAAAACCCTA ACTTCCTTCC CAGCCATAAT TATTATTAAT 
    TTTATTAATA AATACTAGCC ATACTTCATT AAACAAGTCC CCGACACGAT 
    AATCCATCAA GCGAAACCAA CATTCCTTGG AACAGCCTTG CACTTCAACG 
    GATTCTTCAT CTCACTCGAC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3481746 [Map]; Strand: w
      • AT3G11120.1 - [+] show detail - Ribosomal protein L41 family
        Distance: 298; Region: intergenic
      • AT3G11130.1 - [+] show detail - Clathrin, heavy chain
        Distance: 403; Region: intergenic
    Flanking Genome Sequence: GT23791 - 5-prime edge 
    TGAAGGATCT CTGATTCAAT CCTTTTTAAC CGAATGGGCA CTCGCATTCA 
    AACTTTGGAA ATTATTGCCC AACCCATGTT CCACTCGAGA TCAATTCTCT 
    AGTTCAGTAG GAGAAAGTGA TTTTAATTCA TTGTTAATCG ATAGTCGTTT 
    ACAGAGAAAA TGAATGAGAT TTAAGTAAAA GCAAGCTAGT CTTTAACAAA 
    GGACTAATAA CGAAGCCCAT AAGGCCCATA ATTAAAAGCC GGCTAGGCTC 
    ATTTTACACG AATCAGAGCT ACTAATCCCA AAGTATCTTT ATTCATCTCA 
    CTCGACCAAA TGAAATATAG GATTGAAACT AGGGTGTCAT CTAGCTACTC

AT1G13700.1

Model type
Protein coding
Short Description
6-phosphogluconolactonase 1
Computational Description
6-phosphogluconolactonase 1 (PGL1); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1); Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0; Bacteria - 2521; Metazoa - 189; Fungi - 243; Plants - 155; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13710.1

Model type
Protein coding
Short Description
cytochrome P450, family 78, subfamily A, polypeptide 5
Curator Summary
Encodes the cytochrome P450 CYP78A5 monooxygenase. Contributes to the generation of a growth-stimulating signal distinct from the classical phytohormones that prevents proliferation arrest, promoting organ growth.
Computational Description
"cytochrome P450, family 78, subfamily A, polypeptide 5" (CYP78A5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 10 (TAIR:AT1G74110.1); Has 31179 Blast hits to 31066 proteins in 1571 species: Archae - 49; Bacteria - 2905; Metazoa - 11364; Fungi - 6716; Plants - 9120; Viruses - 3; Other Eukaryotes - 1022 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11120.1

Model type
Protein coding
Short Description
Ribosomal protein L41 family
Computational Description
Ribosomal protein L41 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 185 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 40; Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11130.1

Model type
Protein coding
Short Description
Clathrin, heavy chain
Computational Description
Clathrin, heavy chain; FUNCTIONS IN: structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain (InterPro:IPR016341), Clathrin, heavy chain, linker/propeller domain (InterPro:IPR016025), Tetratricopeptide-like helical (InterPro:IPR011990), Clathrin, heavy chain, propeller, N-terminal (InterPro:IPR001473), Clathrin, heavy chain, linker, core motif (InterPro:IPR015348), Clathrin, heavy chain, propeller repeat (InterPro:IPR022365), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); BEST Arabidopsis thaliana protein match is: Clathrin, heavy chain (TAIR:AT3G08530.1); Has 1621 Blast hits to 1503 proteins in 495 species: Archae - 0; Bacteria - 35; Metazoa - 935; Fungi - 178; Plants - 133; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).
Link
InterPro Scan - TAIR