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GT23793

CSHL Arabidopsis genetrap mutant lines

Original: GT23793

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23793

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3499877 [Map]; Strand: w
      • AT3G11165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -787; Region: promoter
      • AT3G11170.1 - [+] show detail - fatty acid desaturase 7
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT23793 - 3-prime edge 
    ACTTTTGGTG TGATGATGCT GACTGGGTTT CTGTTATGAA TGAGTGGTGG 
    TAATACACAA AGAGATAATG TGTGTGAGAG AAACTTGAGT TTTCTACTTT 
    GCTTATCGTC TCTCAATTTC TATCTCTGTC TCTGGATCAC ACGCTTATGT 
    CTTATATAAG TTAGCTACAA CTTGAAAGGA GAAGGAAATT TATTAGTGAT 
    GGTGTGATGT GAGATTTTTT TTTGTGACGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7266837 [Map]; Strand: c
      • AT4G12140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23793 - 5-prime edge 
    GGGGAAACAT ATAAAAGCCA AAAAAACCTA AAACGAAATC AATAATCTCC 
    CTTCAAAAAA AAAAAAGGGC ACCATTTTCT TACCAAAAAA TTTTTGTCCC 
    CCATACAGGG TTTAACCCAT CTTTGAAGCT TCCCCCCCTT ACCACGAAGG 
    GTTATTACAA AAATATTTTA AAATGTATAC ACACCCCAGA AAAATCTGTC 
    TACAGAGTCG TGTTCCATCT GTCTACAGAG TCTAGTCTCC AGTTCGAAAA 
    CAGAACCCAC TCGCATGAGT TGTTCCCATG TCTTCCATAG TAGCTGTCTC 
    GTGGAGTGGC TCAAGAGAAA AAACACTTGC CCGATGTGTC GGACTGTGCT 
    CTACGATCGA TGATGATGAT TGGAACAGAG GATTGAAACT AGGGTGTCAT 
    CTAGCTACTC TATTGCATTT AATGAAAAGT TTATGTAATT TAGTTATCAA 
    CGTTTCAAAT TCTAT

AT3G11165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11170.1

Model type
Protein coding
Short Description
fatty acid desaturase 7
Curator Summary
Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.
Computational Description
fatty acid desaturase 7 (FAD7); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to cold, response to wounding, fatty acid biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: plastid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has 2938 Blast hits to 2935 proteins in 698 species: Archae - 0; Bacteria - 1234; Metazoa - 17; Fungi - 265; Plants - 926; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G12150.1); Has 7725 Blast hits to 7711 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 663; Plants - 3301; Viruses - 68; Other Eukaryotes - 1352 (source: NCBI BLink).
Link
InterPro Scan - TAIR