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GT23797

CSHL Arabidopsis genetrap mutant lines

Original: GT23797

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23797

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9688627 [Map]; Strand: w
      • AT2G22770.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 2032; Region: intergenic
      • AT2G22780.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 1
        Distance: 788; Region: intergenic
    Flanking Genome Sequence: GT23797 - 5-prime edge 
    TTTAATTTCC AAATCCATTG TTCGAAATGA GAGTGCGAAA GCTAAGTGGA 
    AAAAGCCAAA ATTACCAAAA CTCTTAGCAC TAGAAACCTT TCACTGGAGG 
    CCCAAGATTG AGCCGTCAAC TTCACATTTA CGTTCATCTC ACTCGA

AT2G22770.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.
Computational Description
NAI1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G22760.1); Has 3457 Blast hits to 3451 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 69; Plants - 3252; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22780.1

Model type
Protein coding
Short Description
peroxisomal NAD-malate dehydrogenase 1
Curator Summary
encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description
peroxisomal NAD-malate dehydrogenase 1 (PMDH1); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 2 (TAIR:AT5G09660.1); Has 16991 Blast hits to 16989 proteins in 5457 species: Archae - 237; Bacteria - 11827; Metazoa - 1259; Fungi - 489; Plants - 758; Viruses - 0; Other Eukaryotes - 2421 (source: NCBI BLink).
Link
InterPro Scan - TAIR