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GT23812

CSHL Arabidopsis genetrap mutant lines

Original: GT23812

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23812

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7266872 [Map]; Strand: w
      • AT4G12140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23812 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTGCAAT CAACGCAGGT 
    TTTATGAACA ACGGCGTTGA ATTGACCGTT GGCGTCACAG TTACTTACCA 
    GTATGTCCAT GTCGAGGAGA CATCATCAAA GGAATCGAGG ATGGTTCGAC 
    TAGGGAGCAT GAAAGCAGAG GAATTGAAGA GTTTTAACAT GGAAACAGAG 
    TCGTGTTCCA TCTGTCTACA GAGTCGTGTT CCATCTGTCT ACAGAGTCTA 
    GTCTCCAGTT CGAAAACAGA ACCCACTCGC ATGAGTTGTT CCCATGTCTT 
    CCATAGTAGC TGTCTCGTGG AGTGGCTCAA GAGAAAAAAC ACTTGCCCGA 
    TGTGTCGGAC TGTGCTCTAC GATCGATGAT GATGATTGGA ACAGAGGATT 
    GAAACTAGGG TGTCATCTAG CTACTCTATT GCATTTAATG AAAAGTTTAT 
    GTAATTTAGT TATCAAGGTT TCAAATTCTA TATCAATAAG AGGTTTTGTA 
    ATAGCATCAT TACTTCTAAT AACATATCAA CAAGAGGTTT TGTAATAGCA 
    TCATTACTTC TAATAACATT AACTCTAAAC TTTGCTGTTT TTAAGTTCAC 
    ATGCAACTTG TAGACTCATC AATGTTTTCC TCAACAGACT ACACAGACTC 
    ATCAATGATC TAACCTCATT AAACTGCTCC GGCAAAGAGA TCAACAAAAA 
    TATAGCTTGG TCTTCATCAG ATATCTCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7266949 [Map]; Strand: w
      • AT4G12140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23812 - 5-prime edge 
    GCCTTCTCTC ACTCGACCAC GCACACCAAT TGTCGTCGCT ATGGAGTTGA 
    TCGTGGAGTA ACGATTGGAT GTGGTGGTGA CTACAACTAG GGAGACTGAA 
    ATTGATGGGA AGTGATTTAT AGGAAAGCGG AGTGGACGTT TCGGCTCGAT 
    GGCCAGTGAC AGGGTTTATA AGGATCTCAT CCTTAATGGT ATTGACGATG 
    AGGAAGATCG AGTTTGTAGA GACTTTCACA GCTTGGACCT GAACGCTCAC 
    TACGGGTTTG GGAATGGGAT CATTCATCTC ACTCGACC

AT4G12140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G12150.1); Has 7725 Blast hits to 7711 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 663; Plants - 3301; Viruses - 68; Other Eukaryotes - 1352 (source: NCBI BLink).
Link
InterPro Scan - TAIR