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GT23830

CSHL Arabidopsis genetrap mutant lines

Original: GT23830

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23830

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 56517 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -3068; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 682; Region: intergenic
    Flanking Genome Sequence: GT23830 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTGAAAA ATGACAATAT 
    GCCGCACCTT ATTGTCTCTT GTGCAATAAA CGTTGGTTGG ATACAGACAC 
    ATTTGATTGA ATGTGAATAG TTTAGTTTTG ACAGATCATA AGCCGTGTCC 
    TCAAGCAGAA GACCGGTCGT GATCGGTCAA TCTACACGTG TACGGCAGAA 
    ACACATGTGT CGTTTCCCTG TGAGAGATGA TCAACCAAAT CAACGGTCAG 
    TTTTTGTCAA CTAATGTGTG TATTGATTTG TAACATGCCT ACGTGAACAT 
    AAGCTAGTCA CGCAACAAGC AAGGCCTGGG TCACGCGCGC TCGGCTCCAC 
    TAAGACGCGC CGACGTAGTC ACTCATCATA TATCACATGT GTGGAAGTAT 
    TGCCTAAAGT GTTATAAAGA CTCTAATCCA AAGAGAAGGT CTCAGCTTGT 
    GAAAGAAACG AAGTCACGAG AGGCGCACGT GCTTTGTCAT ACAGCTCATC 
    AAGGCTAGAG ACGTAATTAA CCTCTTGCCA ATGGTTCAAC CATTTTGTCT 
    CTTTGTCTCT GCATTTGAAA CAGAGTACGG AAGAAGAGAG AAGAGCGTGG 
    CGGTGAGTAG AGTTGTATAA AGGAAAAGAT AAGTGAGACA TTAGGGTTAA 
    GAGAGTAAGT GCAAGAGAGG CAGCTTGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1963653 [Map]; Strand: c
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: 1309; Region: intergenic
      • AT3G06435.1 - [+] show detail - Expressed protein
        Distance: 5468; Region: intergenic
    Flanking Genome Sequence: GT23830 - 5-prime edge 
    CTACTTGAGA CGGACGAGCT AATTGAGACG GGGGAGCTAC TTGAGACGGG 
    CGAGCTACTC TTTGACACTA AGTGTGCTGG GCGAAT

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR

AT3G06435.1

Model type
Protein coding
Short Description
Expressed protein
Computational Description
Expressed protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR