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GT23851

CSHL Arabidopsis genetrap mutant lines

Original: GT23851

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23851

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 181503 [Map]; Strand: c
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT23851 - 3-prime edge
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCATTATT CCATGCGTAG 
    ATGATTCTAT TATTTCCTTT TCTTATTATA ACATTTATCC ATAAACATCT
    GTAAGTAAGA AAATGATTGG ACTCACTGAC CGGTAAGCAA CAAGAGCCCA
    TATGAGACCG ATTAGACTGG AGTACGTGTT TGGGTTTCTG ATCAGCTTTC
    TCCACACCAT TATCAATATC AGTCGTGTCA TCACACTTGT CGGCGGCATA
    TGTGTTCCGT TGTTGCCGCC GCCATCTCCA CCAGCCGCCT CTAGCTCCGC
    CGTGGAATTA GACCCCATTT TATTCAGCCC TGCTGTAGCT TTCTCTATCT
    CTCTTTCTCC CTCTCCACTA TCAAGACCGC CGATATCATC ACCACCACCT
    GAGAAAACCA AAAATCATGA ATACATACAA AAATAATAGT ATTCGAATAA
    TAATAAAATT AAACCAACAA ACCTCTAGCA TATTATTTAT GTAAACAATT
    TTCCGCAATT TTAGCTAAAT AATATTTGAT GACAAAAAAA AAAAAAAAAA
    ACCCCTTTTT TTCTTTTTTT GGGGTGGAAA AAAAAACCCC CCC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 181421 [Map]; Strand: c
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT23851 - 5-prime edge
    CCTGATATTG TAGTCGGGAC TAATAATGAG TATGGGTTGT TTTTGGAAGC 
    AGGTGGCATG TGGCTATGCC CAAAATATTA CAACAATCCA TCTCCATACT
    CTCAGATGCT GGTCTTGGAA TGGCTATGTT CAGCTTAGGT AAACACTAAC
    CTTGCTTCAT GCAAATCTAG ACTTGTTTTG ATGATGATCT AATCTTTAAA
    GTTGGGTCCA AATTTGTTCT CATCTTATCT GTTAAAAAAG ATTCATTTAA
    TGCAAAGTGG GTCTGTGTGT TTAATTAGTC GTAGTTGTCC AGCTTGTAAT
    TGGTAAAAGT CATATAAACT GTACAAAGCA CTTACCCAAA GAGAGAATCC
    TGACCCTCTG ACCCAGACAT GTTGGTGTGT CCGGTCCCCA CGCCGAGTCC
    CCACTGGCTC TGTCTACTTA TTTGGGTCTC ACCAAGTAGA TGACCTAACT
    CTTTGCTGTC AATTTTCTCA AATCCTTTTA GTTAACGAAT TGCTTATTTT
    TGGTGTAATT TTAAGGTTTA TTCATCTCAC TCGA

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1823 Blast hits to 1616 proteins in 502 species: Archae - 31; Bacteria - 1046; Metazoa - 18; Fungi - 10; Plants - 487; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).
Link
InterPro Scan - TAIR