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GT23881

CSHL Arabidopsis genetrap mutant lines

Original: GT23881

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23881

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28408007 [Map]; Strand: c
      • AT1G75640.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -956; Region: promoter
      • AT1G75650.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G75660.1 - [+] show detail - 5'-3' exoribonuclease 3
        Distance: -140; Region: promoter
    Flanking Genome Sequence: GT23881 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCT CCGTTGTAGT CTAGCTGGTC 
    AGGATACTCG GCTCTCACCC GAGAGACCCG GGTTCGAGTC CCGGCAACGG 
    AGTTTCTTTT TAGCCCATTT TTTTGTTAAA TGGGCTTCCG ACAAAGCCCA 
    TATTTTTTGG TTTTGTCTTA AGCCCGATTA CTGTTTCATT AATCCGATTT 
    TTGCTTTCTC ATCCATAAAA AGGAAAAAAC CCAATAAATG TGCACTTCGT 
    GACCTTAACC GCCGTCGGCA AACACCGTTG GTTTTTTGCT TTCTTGTTCA 
    TCTCACTCGA CAAGATCGTA CCGTTACCCG ACCGGATCGT ATCGGTATAT 
    TCATCTCTCT CGACCAGATC GTATCGCTAC CCGACCGGAT CGTATCGGTA 
    TATTCTTCTC TCTCGACCAG ATCGTATCGT TACCCGACCG GATCTTATCG 
    GTATATTCTT CTCTCTCTAC CAGATCGTAT CGTTACCCCA CCGCATCTTA 
    TCTGTATATT CTTCTCTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28407926 [Map]; Strand: c
      • AT1G75640.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -875; Region: promoter
      • AT1G75650.1 - [+] show detail - pre-tRNA
        Distance: -58; Region: promoter
      • AT1G75660.1 - [+] show detail - 5'-3' exoribonuclease 3
        Distance: -221; Region: promoter
    Flanking Genome Sequence: GT23881 - 5-prime edge 
    TTTCTCCCTA CGGATTTGTG ATCGATTTCT TAGCTCAAAT TATATGAAAC 
    TTAACAAGAA TTGACTCAAA GAATAGAGAA CACGAAGGAC TTGTTGTACT 
    TGATTAAACT AGTCTCTTTC GGCTTTATGT CTAGTTCTTG TGGTCCATCT 
    ATTCCGGCAG AAATTATGAT TCTTGGATTA AAAGATCCTT TTGTTTAATC 
    TTTCTTTGTG AGATTAGTGG TATAATAAGT CTTTGTTATA CATTTTTCTA 
    ATAGTCTATT TATCTACATT ATCCATATGA CAAATAGTAC TGTAGGCTAA 
    AGAAAAAAAC AATTTTGTTA TAAAATTATA AATTCCCCGT TTGCTTTGCA 
    TGATCTATGG GTAAACCAGG AACCTTAACT AACTGATCCA TCTGATAAAC 
    ATGGAATGAA AAACATTTTG ATTAGTGGAT TTCGATTTTT AGAAAGAGTA 
    AGCTTTGAAT ATTGAAAATC ATAATAATTC ATAATCTAAC CATATATGAG 
    ATACTATGAA TATCCTTTAG TGAGAAATAT GTACGATTTG GTAGTTTCTG 
    ATATACCAGC CATGAGAGAT GCAGAGTTGG TCGTAACATT TGTCACAAGA 
    TTGGTAGCTA CGAACATAAT GCAGATACTG TCATACACGC ACATGTATAC 
    TTACATACAC AAAACGATAT TGCATGTAAG ATATTTTCTC ATAATGTTTT 
    GATGATATTT ACGTTGCTTG GTGAGACATA ATCAACCAAT TTACATCTTG 
    T

AT1G75640.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G36180.1); Has 252963 Blast hits to 139481 proteins in 4227 species: Archae - 190; Bacteria - 23104; Metazoa - 78698; Fungi - 11188; Plants - 110092; Viruses - 401; Other Eukaryotes - 29290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75650.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Glu (anticodon: CTC)
Link
InterPro Scan - TAIR

AT1G75660.1

Model type
Protein coding
Short Description
5'-3' exoribonuclease 3
Curator Summary
Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
Computational Description
5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
Link
InterPro Scan - TAIR