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GT23883

CSHL Arabidopsis genetrap mutant lines

Original: GT23883

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23883

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10935279 [Map]; Strand: w
      • AT5G28913.1 - [+] show detail - transposable element gene
        Distance: -549; Region: promoter
    Flanking Genome Sequence: GT23883 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAATATTACT AATATGTCGA 
    TTCTATATAT TTATATTTAT GCATGAGTTT GGTTTATGTG TTTATGTGTT 
    GGATATTTAA GTGTAAACTA CTTAAATCAA CGGTTATTTA TTTAACCATT 
    GCAATTGTTC ATTTTATGGT TATATTATAA ATGTACGGTT TCAAACATAC 
    GTTATAACTT TCCGACCATA TATAACTCTG TTTTCTTGTG TTAAAAACAA 
    AGTAAACAAG AGAGAACAAG AGAGATTCAG GAAACTAAAG ATTGAGAGAA 
    TCTTTAGTGA AACACACAAA ACTTTTATTT ATTTCTCTTG TATCTAGCCT 
    AGAACAATAT AAAGTACTTT GATTGTCATA TCTTAGGAGA TATTTAGTGT 
    AACCCAAAGT TTGAGAAGGA TAATACTCTT AAAGAAAAAT GCTTCCAAAC 
    ACGTTTTAAT CATTGATTAT CAAAGTTCAC GTTCATTACA TCCCCGAGAT 
    ACAATGTCGA TCTACAATAA ATGTCACAAA GATATCAAAA ATAAAACAAT 
    AATATACCAT TGGCATGATT TAAATTGTTG GTATATTTTT TCACTTGGAC 
    AATCGTTCCT CTACTGTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23993585 [Map]; Strand: w
      • AT1G64590.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT23883 - 5-prime edge 
    TCACCCTAAG ACCAAAACCC CAACACTCAA ACTCAACTGC TCTCCCATAA 
    CCGAAACCGA GAGAAAATAT AGAAAAAGAT GATTGAGACG GTTAAACACC 
    TGATCGGCTC CGGTGGTCCC AGCGGATTCG GGTCAAGATC CACCGCCGAT 
    CATGTCACTT GTAATTCTGA TCTCCGTTCT CTAACTGCCA TCATCACTGG 
    TTAGTCATAA ACTTAAAGTT ACTTCTTCTT TTTCAACTTA ACCGAGTCGC 
    AAAATGAGTT TCCTAACTAA TAGTCTCTCT GTTTCATCTC ACTCGA

AT1G64590.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G24050.1); Has 62352 Blast hits to 62301 proteins in 3130 species: Archae - 564; Bacteria - 41137; Metazoa - 4183; Fungi - 3748; Plants - 2129; Viruses - 0; Other Eukaryotes - 10591 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28913.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
Member of Sadhu non-coding retrotransposon family
Link
InterPro Scan - TAIR