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GT23889

CSHL Arabidopsis genetrap mutant lines

Original: GT23889

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23889

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23199676 [Map]; Strand: w
      • AT3G62710.1 - [+] show detail - Glycosyl hydrolase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT23889 - 5-prime edge 
    TAGGAGCATT TCCTTGTAAT CCATCGATGA TACTTTCGGT CATCATATTC 
    ACAACTGCAG GGTCTTCACT ATAGCTCTCG TAACACCTTC CCCATCTAGG 
    ATCTCTGCAA ACCTGTTCAT CCATTTTTTT TCCAATACGA ATGAGAAAGG 
    TTTATTATAC ATCGACATCT ATATTTCTGT TGTAGAATTT CTACATAATT 
    ACCGCAACAC AAGGTGCAAA AGCTTGAGCG ACTCCTGTTG CCCTTACTTC 
    CTGCGCGGTT ATAGCCCCAA TCTTTTTAAC AAGTTGAGGA TCCCTACAGC 
    AACACAGATT GACAACCGTC AAATGCCTTG AAACAGCATT TCACATAACC 
    TATTTATATA TGATTCATTT ACATATATAC CTAGTGGCAC CAAGTCCGAC 
    ATTGTGGGGG AAAATGGTTG CATCAATAAA AGTATTGTGG CCATGAACCG 
    CGTCAACAGC GTAAAGCAGA GGGATTCCGA GCCTCGTCGA AAGACTCAAT 
    TTCTTCATCG CGTTAGTCTG GAATATCCGC TTTGCTATGT CTTTCCCGGT 
    ATCATACGGA TTGCTCAAAA CACTTCCTGT AACTCGAACA TACACCAATT 
    CAATTATAAG CTTTATCAAA AAAAAAAATT TT

AT3G62710.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family protein
Computational Description
Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20950.2); Has 10899 Blast hits to 10226 proteins in 1653 species: Archae - 71; Bacteria - 6941; Metazoa - 14; Fungi - 1479; Plants - 475; Viruses - 0; Other Eukaryotes - 1919 (source: NCBI BLink).
Link
InterPro Scan - TAIR