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GT23985

CSHL Arabidopsis genetrap mutant lines

Original: GT23985

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23985

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23399781 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT23985 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCGAC CTTACTGTAT TTTTTGTTTT 
    TTTTTCCACT AAAGGGTTCC CTTAACCTTA GGTCTTGGAG GAACTCACCA 
    AGGCCTTCGG CCTTTAATTA CGGCAAAAGG TTAAACAAGG GGTCAATTTG 
    GGAATTACTT GTTCACGGGA TAGTTTAGAA CTAAGTAATT ATGCCCAAAA 
    AAAAAAAGGG CGGGGGAAAC AAGCTACCTA GTATTGAAAA AAAAAAATTT 
    TCTTCCCAAG TTCGGGAAAC CTTTATTTAT ATCAAAATAA AAAAGTTCGG 
    GAAACTTTTA TCCATATCAC CCTGCAATAA AAAATTCAAT TATTCCACCC 
    AACAAAATAT AAAATTGAAA ATAAGGTTGC TTTCCTTTTA CAGCGCATTA 
    AAGTGGCAGG TTCTTCGTCT GTTATATATA ACATGTTTAC GTCCCAAACC 
    AAAAAAAAAC TTAAATTAGG AAATTCAATT ACTTATTTAT CTGCAGGGAT 
    TCAAAAAAAT CAAGGCAAAA AAATGGAATT TTATAAATGA AGGTTTCTTG 
    ATGGGTCAAA GGAACCTTCC CAAAACCATC AAGCGACAAA CCCCCCCTTC 
    TTCCCCCCCT TCGCTTAACA ACCCTCATCC CCACCCCAAG GCTCAGAACC 
    CAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23399691 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23985 - 5-prime edge 
    CCTGGTCGTT TAGTGGAGAA CAGAGATACT CACATAAGTG TTAAGTTGTC 
    TGACAAAGCT GGAGAAGTTG TTGTGCTTGA AGTATAGAGG CAGAATAGTG 
    GCCGAGAAGG AATGTGGATC CCACACGACA AAACTGATGC CTCCCCTGTT 
    CCAAGACACA ATGTGGTTTG TGTTTGGATC ACCAACCATC TCGAACGTCT 
    TTGTTAGAAA AGGAGAAGGC CCTGCTTCCT GCAATCCCTC CATAGGCACC 
    GGCGGTGGCA TTGACCGTGC TCTGGAGCTT GACGACGGGT CCATCTTGTT 
    AGCAATGCTA ATGCTAGAAG TCTAATGATC TATGATTGGA TTTTTCGTAA 
    ATTATAATCC AAGGAAGGAA ACGATGCATT TGGGGTTCCT GTATTGGAGA 
    AAACCAAAAC AGCACAAAAC CAAAAAAAAA AAGAGCGGGA AGTGTATTTT 
    TTTCTTTAAA ACAAAGTACT CTGCTTTTGC TGGTGGTTAG TTACTTAGTT 
    TATGGCAGTT GGGGCAGGAA ATGTGGCAAA AACAATGGCC ACGTAGGTGA 
    CTTAAATCCA TATATATATA TAGCGGGGAG CTGGTGATCT TTAAATTTTT 
    TTTATTCCCC AGGTGGATTT CAAATTTTCT AAAGCTTTTT C

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR