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GT23989

CSHL Arabidopsis genetrap mutant lines

Original: GT23989

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23989

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22771060 [Map]; Strand: w
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23989 - 3-prime edge 
    TTCCCGCAAC ATGATTGGGC GTCAAGCGAG TCCCTCAGTG CGCTAGCCGT 
    ATCTTCTTCT TCTGCTTCTC CTTTAGTATT CTCGCACATC ACGCGGCGGC 
    GAGGATCGTA TTCTCTAGCA CTCTCGTTCT TCGAGTACCT GGATGCGAAG 
    TCTCAGTCTC TGAAACGCCT TGAAGAATCT CTCTCCTTGG CGCTTCAGTC 
    GGTCATTGAA TTCGCCGGTA GTGAACCGGA CCCGCGTGAT AAACTTCTCC 
    GTCTCTACCA GATCGCCAAA GAGAAGAACA TTCCTCTTAC TGTCGTTGCC 
    ACTAATCTTC TGATCCGATG GTTTGGGCGT ATGGGTATGG TGAATCAGTC 
    GGTTCTTGTA TACGAAAGAC TCGATTCGAA TATGAAAAAC TCGCAGGTTC 
    GTAATGTTGT GGTAGACGTC TTGCTAAGAA ATGGACTTGT GGATGATGCC 
    TTCATCTCAC TCGACCAGAT CGTATCGTTA CCCTACCGGA TCGTATCGGT 
    ATATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22771278 [Map]; Strand: w
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -4; Region: promoter
    Flanking Genome Sequence: GT23989 - 5-prime edge 
    AGGAATCGAG AATGGTTGAG CAGAATATAA GAGTTCCGGC GCCGGGAAAT 
    TGATAGCATG ATACTCATCG TCTAAGGTTT TGAAAAAGAC GGCCACCGGG 
    AAAAGTGAGA CGACGAACTC TGTTCGGCGA ATTCAACGAA CAAGAAGTTG 
    GGCCCATTTT AAATAATGGG CTTACACATA TTTAGCCCAA ATAAACCTTT 
    ACAATATTAC ACAATGGGTA CAAAAATTTA TTTTTTCTCA TAAAACTGAA 
    CGTGAGCTTT TTATTATGCT GACTGATTAC ATTATATTTA TAACAAAATG 
    AGGACGAATC TTTATTTTTC TCATATAATT ATCCCCTTGT TTTATTAATC 
    AAGCCACCAC CCTGAACTCT GAAATAGCTC CTATGGATTA CACTAGTTTT 
    ACCCGCTAAT AACTATCCTA TTAAAGGATT TTTATTTCTT CAACCTACTC 
    AAAATGAAAA GCTACGAAAA TTGCAACAGC TTTGTCACTG AAAAAATGGT 
    GAATCTGAAT GATCCATCTT TTCAGCTGAT GCGGCTGCAT CAGAAGCAGC 
    TTTATCTAAT CCCAATTT

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR