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GT23992

CSHL Arabidopsis genetrap mutant lines

Original: GT23992

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23992

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26776158 [Map]; Strand: c
      • AT5G67090.1 - [+] show detail - Subtilisin-like serine endopeptidase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G67100.1 - [+] show detail - DNA-directed DNA polymerases
        Distance: -836; Region: promoter
    Flanking Genome Sequence: GT23992 - 3-prime edge
    TTACCGACCG TTACCGACCG TTTTCATCCC TAACATAATC TTATGGTTTT 
    CTATTGGTTA TAACTGAAGT AAGAGTTGTG GAAAACCAGC TCCGATGATC
    GGAAAATGGC AACGGTTTAG CGGATAAGTC CATGTGGATG ATGTAAGGAG
    AGGTCTCCGC CGTTACAATC GCTACGAAAA ATGAGAACAC CAGAATAATT
    ACGACGGTCA TCCCCATGTC TGAGCAAGTT TTTTTCTCTG GTCTCTTCAA
    ACTGAAATGA ATTTTGGTGT TAGTAAGAAA CAATTATAGT GTTGTTGTTA
    ATAGATGTTT AGTTTTTATT ATGACAAAAA AGTTGCAGAG ATTGTAACCT
    TTACTTGGCT TTTGCTTTTG TTAAAGTGGT TTTAGGTGGT CGGCAACACA
    TCATCTCTCA TCATTGTTTT TTTTT

AT5G67090.1

Model type
Protein coding
Short Description
Subtilisin-like serine endopeptidase family protein
Computational Description
Subtilisin-like serine endopeptidase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT3G14240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67100.1

Model type
Protein coding
Short Description
DNA-directed DNA polymerases
Curator Summary
Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.
Computational Description
INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR