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GT23995

CSHL Arabidopsis genetrap mutant lines

Original: GT23995

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23995

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4951227 [Map]; Strand: w
      • AT3G14730.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G14735.1 - [+] show detail - U6-1; snRNA
        Distance: -58; Region: promoter
    Flanking Genome Sequence: GT23995 - 5-prime edge 
    CTGCATGTAG CACATTAGTG GTGCTCGTAT CTCTTCGGGT TTTCTTCGAT 
    TTGCCCAGAA ACAGTCGAAT ATAAAGATGC TAAAGCAGAA GAAGGCTTTA 
    TAGCTGCGAA TAAATCTGGG TTCCGTGGGA GAAATCTCAA AATTCCGGCA 
    GAACAATTTT GAATCTCGAT CCGTAGAAAC GAGACGGTCA TTGTTTTAGT 
    TCCACCACGA TTATATTTGA AATTTACGTG AGTGTGAGTG AGACTTGCAT 
    AAGAAAATAA AATCTTTAGT TGGGAAAAAA TTCAATAATA TAAATGGGCT 
    TGAGAAGGAA GCGAGGGATA GGCCTTTTTC TAAAATAGGC CCATTTAAGC 
    TATTAACAAT CTTCAAAAGT ACCACATCGC TTAGGTAAAG AAAGCAGCTG 
    AGTTTATATA TGGTTAGAGA CGAAGTAGTG ATTGTCCCTT CGGGGACATC 
    CGATAAAATT GGAACGATAC AGAGAAAATT AGCATGGCCC CTGCGCAAGG 
    ATGACACGCA TAAATCGAGA AATGGTCCAA ATTTTTTTTG GCAAAAATTT 
    TCAAATTTTT TCTTCATCTG TAGATTTCGG GGTTTTTTTT TCCGTTTCGG 
    GAATCAAA

AT3G14730.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 39287 Blast hits to 13376 proteins in 233 species: Archae - 0; Bacteria - 3; Metazoa - 52; Fungi - 106; Plants - 38683; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14735.1

Model type
Small nuclear RNA
Short Description
U6-1; snRNA
Computational Description
gi|16516|emb|X52527.1|ATSNU61 Arabidopsis thaliana U6-1 snRNA gene
Link
InterPro Scan - TAIR