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GT24021

CSHL Arabidopsis genetrap mutant lines

Original: GT24021

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24021

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3500053 [Map]; Strand: w
      • AT3G11165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -963; Region: promoter
      • AT3G11170.1 - [+] show detail - fatty acid desaturase 7
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24021 - 5-prime edge 
    ATGTGGTATA CGACCTCTCC CCAGAATCTA CACAACACCC AGATCCAATT 
    TCCTCTCCAA CAACAACAAA TTCAGACCAT CACTTTCTTC TTCTTCTTAC 
    AAAACATCAT CATCTCCTCT GTCTTTTGGT CTGAATTCAC GAGATGGGTT 
    CACGAGGAAT TGGGCGTTGA ATGTGAGCAC ACCATTAACG ACACCAATAT 
    TTGAGGAGTC TCCATTGGAG GAAGATAATA AACAGAGATT CGATCCAGGT 
    GCGCCTCCTC CGTTCAATTT AGCTGATATT AGAGCAGCTA TACCTAAGCA 
    TTGTTGGGTT AAGAATCCAT GGAAGTCTTT GAGTTATGTC GTCAAAGACG 
    TCGCTATCGT CTTTGCATTG GCTGCTGGAG CTGCTTACCT CAACAATTGG 
    ATTGTTTGGC CTCTCTATTG GCTCGCTCAA GGAACCATGT TTTGGGCTCT 
    CTTTGTTCTT GGTCATGACT GAAAAACTTA AAAACCCTAA TTTTTTTCTT 
    GTTTTCTCCG CTGCTTTAGC CTCCTTTAGC CTTTGATTTG GCCAACTTTG 
    GATGATTCCA AAAAACCAAT CAAACAAATT GGTCTTTATC CATAT

AT3G11165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11170.1

Model type
Protein coding
Short Description
fatty acid desaturase 7
Curator Summary
Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.
Computational Description
fatty acid desaturase 7 (FAD7); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to cold, response to wounding, fatty acid biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: plastid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has 2938 Blast hits to 2935 proteins in 698 species: Archae - 0; Bacteria - 1234; Metazoa - 17; Fungi - 265; Plants - 926; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
Link
InterPro Scan - TAIR