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GT24044

CSHL Arabidopsis genetrap mutant lines

Original: GT24044

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24044

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2946154 [Map]; Strand: c
      • AT5G09460.1 - [+] show detail - sequence-specific DNA binding transcription factors;transcription regulators
        Distance: 0; Region: exon2 (5UTR)
      • AT5G09461.1 - [+] show detail - conserved peptide upstream open reading frame 43
        Distance: 0; Region: exon2 (5UTR)
      • AT5G09462.1 - [+] show detail - conserved peptide upstream open reading frame 42
        Distance: 0; Region: exon2 (5UTR)
      • AT5G09463.1 - [+] show detail - conserved peptide upstream open reading frame 41
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT24044 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGGATCC CATTATTAAA 
    GAGTTTAGAA AAGGCTGAGG ATTTAGAAGA AGATTGAAGA TGGGTTTTTT 
    CAAGGCAGAG AAAAAGTTTA CAGAATAACT CGGCAATACA GATTCAAGCT 
    CACAACTTTA CGGTACACAT CAACAGACCT TGTGAACCAA CTCATGCTGT 
    TTTTCTCATT CACTGCTTTG CTGTGATCCA GAGAAAGAGA GAAGAATTCT 
    GTTACAAAAC AGAGAATCAT CTCATCAAAT TCCAGTAATA ACAAACCAAA 
    GAAACCAAAC ATTCACAACA ATTGAAAGGA TAGAGAAACC ATAAACAGCA 
    AAAGAAGATA AGTACATGTT CTGCAGCATT GAACAAGTAT AATTTATTTT 
    AGCAAAATCA AGAACTAAAA GCTTGGATTT TGCAAGCCAA GCTACGAAAA 
    TAGAAAAATT TATCCGTTTT GGTAACGATT TAAACACATT TGCATCAAAT 
    TCGCTGATAA TTCAACTTTT TCGAGGAATA AAAAAACAGA GAGAGCACAG 
    CGACAAACAA TGGTTAAGTG AATCCAAAAA GCGTACATGG AGGAAAACAA 
    AGGAAGATCT ATGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2946062 [Map]; Strand: c
      • AT5G09460.1 - [+] show detail - sequence-specific DNA binding transcription factors;transcription regulators
        Distance: 0; Region: exon2 (5UTR)
      • AT5G09461.1 - [+] show detail - conserved peptide upstream open reading frame 43
        Distance: 0; Region: exon2 (5UTR)
      • AT5G09462.1 - [+] show detail - conserved peptide upstream open reading frame 42
        Distance: 0; Region: exon2 (3UTR)
      • AT5G09463.1 - [+] show detail - conserved peptide upstream open reading frame 41
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT24044 - 5-prime edge 
    ACGTTTCTAC GTTTTCCACT GTGACCAATA TAGGATCATC TAAACCCTTA 
    AAGCTTCTCT TTTTCTTCTT CAAGTCATCT GTCTTTTGGT GACTTACTCT 
    GTTCTGTGGA GAAACACTAG TTTTACATTC GAGAGTTTGG AAAAGTTATT 
    ATTATGGTAA GTCAATCAGC TGGTCAAACA AGATTTCGAA CATTCAAGTA 
    CGAGAACAAC GGAGACTCTA GCAGACCAAC AATTGTAGTG AGAGTTATTG 
    CTTGCTTTCA ACCGATGGAT AATTGTCAGG TTTGTTGCAG CAAAAATGAT 
    ATTATACTCT TTTTTTTGTC ACATTTCATC TCACTCGACA

AT5G09460.1

Model type
Protein coding
Short Description
sequence-specific DNA binding transcription factors;transcription regulators
Computational Description
sequence-specific DNA binding transcription factors;transcription regulators; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G64340.1); Has 178 Blast hits to 178 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 1; Plants - 159; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09461.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 43
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF43 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 43 (CPuORF43); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 40 (TAIR:AT5G64341.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09462.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 42
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF42 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 42 (CPuORF42); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09463.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 41
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF41 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 41 (CPuORF41); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR