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GT24081

CSHL Arabidopsis genetrap mutant lines

Original: GT24081

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24081

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18439256 [Map]; Strand: w
      • AT4G39750.1 - [+] show detail - F-box family protein-related
        Distance: 0; Region: exon1 (CDS)
      • AT4G39753.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -856; Region: promoter
    Flanking Genome Sequence: GT24081 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGACGAGAGA GCGAAAGGAC 
    TTGAGACTAG GGAGAGTTTC GGGTAGTACG ATCTCGATAT GTGTGCTAAA 
    CAGTTCTCAA CGATATAATC TGGAAGCCAC GGCTGCTTCT TTTTCTGCGG 
    TGGTTCGACT TCAGAACTCA TAGCGGCAGA CGACGTTTTT GAAATTAGGG 
    TTAAACACGA GAGTCGATGG AGAGTGTTTT TCGATTTTGG ACTTTATATA 
    TTTAATTAAA CACGACTAGG TCAGCATTTG TACCTTTTAT TTTACTTAAT 
    TTATAAATAA CCCCTCTATT TCATTTAGGT GATCTACTCG ACCCCTTTAG 
    AGAAAAAAAA AACAGTGAAA AAAAACCCCG TAAGCCAAGG TCAGTTTGAC 
    CGTACACATT CAAACATGTT ATTTTGGTCT CAAATTAAGT AAAAAAAATC 
    GGGGGGAAAT AAATTACAAA TTACAAAGTA CCCCCTAGCT TTTACATCAA 
    AAAAAAAACA TCTTCAAAAA AAAAATTTTG AACGTCTTTG ATGTTTCCCC 
    CTTTAACTTG TAAAAGTTAA AACAAAAAAA AAAAG

AT4G39750.1

Model type
Protein coding
Short Description
F-box family protein-related
Computational Description
F-box family protein-related; BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G28180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39753.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39756.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR