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GT24110

CSHL Arabidopsis genetrap mutant lines

Original: GT24110

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24110

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981291 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24110 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCCATTT CACGCTCACC 
    TTGAAGCACC CTGATCCCAA CTTGAGTCTG ATTATCGGCT GCAGTTGAGA 
    ACACCTTCAA GAGAATGAAA CGAGACAATC AACATTTTAG TAAAAACTTG 
    ACAAAAACAA TGGTAGCTTT GGATGGCTCA TAAATTAGTA TATATCACAG 
    GAATGTGCTT TCATGACCCC TGTTAAAGAA GAACCAGAGA GATCTCGAGC 
    GTACAAAGAG AATCGAAGAG ATTGTGATTG CAAAAGTGTT ACTTATATAG 
    AGAAGAGGAG ATTCTGTGTT CGTAGTTGGA ATAGGAATCG CAGGAGTTAT 
    AGAGATAAGA GCTCCGGTCC CAAGTCATTT TCGATTTGGA GGACTCGCAT 
    AGAGTTTTAA ATTTTTTAAT TTTTTTAACA AACGCAAAAA TTAGCCTGAT 
    TAAAGTTATT GATAGAAATT GCATTAAAAA TTAAAACATC ATCACTGCAA 
    ATAAAACAAT ATTTTAACTC ATCTTTTCCT GAAATTGAAG TTGACAAATT 
    TCATGAAAAA AACTTGTAGC AAAAAGAGTA ACGTACCAAC AAAACTTTGG 
    TAAACATTTA TTACATCATT CAAAAAAGGT CTGAAAACAA AGAAAAGCAA 
    CAAACATACC CCCAAAAAAG CCTCGAATCC AAAGAAACAG GTGCTAAATC 
    TTTACCTTTT CAAAACAGAG TTTAACAAAT GTTTTCTTGT CTCCTTATTA 
    ATCATCTCAA AAA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT24110 - 5-prime edge 
    CCCCGGTTTC CCCCAGGGAC AAAACAACGG GTAAGGACCA CCAAACCACA 
    ACCCAACCCC CTAATGGTGG CCCCTTCCAG AACAACCCCC TCCAATTCCA 
    AAGGATTTCT TCCGGAACCG AATTTATTTC TTTCATAATT TCCCTTTTGG 
    CCAAAAAAAA AAGAACCAAA AAACAAACCT TGGTCCCCAA CCTTGGTCTT 
    CCTCCAATTC CCCTGGCACC CAAGGTGGTG GAAAATCCCT TCTCCCCTGG 
    CCCCCTTCCC TCTTTGGTCC TTCCCCCGGG AAATTCTCCA TTTGAACCTT 
    TGGTTCCGCT GGTTCTTCCT TTCATCCGGT GGTTTCCCTC TCTTCCCCTT 
    TAACCTCCGG CTCCTCCCGG TCCCCCTGGT TACCTTTTTC CAAATTTCCC 
    GCTTCCTTCC AATTCTGTGG AATAACAACT GGCCCCGTTT TTTCCCCCAC 
    CTCCACTTTT TTGGTAACCA ACTCCCCCTA AATTTTAATC TTTTTGGTTT 
    TGACCAACAA TTTCCCTCCC CTCCGGCTAA ACCCGGGGAA CAAAACCCTC 
    CTCTTCTTCC AAACCCAAAA AAACTCAGGG TGGGGGCTTC CAAACTTAAA 
    CCCCCCAAA

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR