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GT24118

CSHL Arabidopsis genetrap mutant lines

Original: GT24118

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24118

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981205 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24118 - 3-prime edge
    GGCTGCAGTT GAGAACATCT TCAACAGAAT GAAACGAGAC AATCAACATT 
    TTATTAAAAA CTTGACAAAC ACAATGGTAC CTTTGGATGG CTCATAAATT
    AGTATATATC ACAGGAATGT GCTTTCATGA CCCCTGTTAA AGAAGAACCA
    GAAAGATCTC GAGCGTACAA AGAGAATCGA AGAGATTGTG ATTGCAAAAG
    TGTTACTTAT ATAGAGAAAA GGAGATTCTG TGTTCGTACT TGGAATAGGA
    ATCCCAGGAG TTATAGAGAT AAAAGCTCCG GTCCCAAGTC ATTTTCAATT
    TGGAGGACTC GCATAGAGTT TTAAATTTTT TAATTTTTTT AACAAACCCA
    AAAATTAGCC TGATTAAAGT TATTGATAGA AATTGCATTA AAAATTAAAA
    CATCCTCCCT GCAAATAAAA ACAATATTT

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR