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GT24119

CSHL Arabidopsis genetrap mutant lines

Original: GT24119

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24119

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2344689 [Map]; Strand: c
      • AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1219; Region: intergenic
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: -2779; Region: intergenic
    Flanking Genome Sequence: GT24119 - 3-prime edge
    TTACCGACCG TTACCGACCG TTTTCATCCC TTACGAATTT AAACGGGAGA 
    GAATTGGAAT GGGCTCCCCT ATAATATCAA TTATCTACAA CTTTTTTTTG
    CTAAAAATTA TCTACAACTT ATAACATCGA TTTAGAATTT GATAAATAGT
    TAAATACTTA TAAATCTCTG GATCGGGTAA TTTAATGATG AATAGATAAC
    ATCGATATTT TCATATTTTG GTGACAATAT TTGCATAATT GTTCGAAAGA
    ATAAAATATA TACATCACCA CTTACACAAA CAATTATGTA GGTGATGCAT
    AACTGTTTGC CAAATTTCCT GTTTGTAATA CATTATGTAC AACATATGTT
    ATTTTCTTTA CCCAAAAAAA AAAAAAAATT TTAAAAAAAA AGGGTTTAAA
    AAAAAAGTTT TTTTTTTTTT TAAACCGGTT TTTTGGGTTT TTTCCCCAAA
    ATTTTTTTTT AAAAAAAAAA AAAATTTTCC CGTTTTTTTA AAAAATTAAA
    AAAACCCCTT GGCCCCCCCC GTTCAAAAAA AATCCCCAAA ACAACAAAAA
    AAAGGGGTTG GGGGTTTTTA AAAAAAAAAA AAAAACAAAA CGGGGGGGGG
    GGAAAAAAAA AAAAAACCCC CAAAAAA

AT3G07340.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR