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GT24123

CSHL Arabidopsis genetrap mutant lines

Original: GT24123

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24123

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4783158 [Map]; Strand: c
      • AT3G14330.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -706; Region: promoter
      • AT3G14350.1 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon16 (CDS)
      • AT3G14350.2 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon15 (CDS)
      • AT3G14350.3 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon17 (CDS)
    Flanking Genome Sequence: GT24123 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCTACCG GAGCCGACTC 
    CAACAGTTCT CTTGCTCATG TTAGCTCTCT GCACCAATAC AACCAATGCT 
    TGCACCACTT CAGACATGGG TGGTCTAAAC TCTGGCTCCG GCTGTAACAG 
    ATTAAAAGAA CAATATACAT TCAGATTTCA TTTGTTCAGA TCATCACATT 
    ATAATATATA GATGATTACC TGGACGCAAA GGGCGATAAC ATCTGCAAAT 
    CGGGAGAGGG ATTTAACCGG GTATAGCCCT TTGAGAGCTG GATCAACCAT 
    TTTGCCCAAA GCATCAATGT CGTGAAGCTG AGGTGTTGCC CATCTTACCA 
    ATGATTGTTC CGATCTTGAC CTTGTGCTGT CACACACAAC AATCACCAGG 
    ACTTACTTCA ATTCTGAACA CATTTGCATC ACTCTTAAGT TTTTTTAGGA 
    AGGCGAGGGA TATGGATTGT AAAAGTACCT GTCAAATGGT TTTCTTCCGG 
    TTAAAAGCTC GAGGATCACT ACTCCAAAAC TGTAAACATC GCTCTTTAAA 
    GAGTATTGGC CTGACATTGA AGTTTCTGGT GCGCTGTATC CTTCATCGTT 
    TTGGTTTAGA AGCTGCACAA TGTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4783073 [Map]; Strand: c
      • AT3G14330.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -621; Region: promoter
      • AT3G14340.1 - [+] show detail - unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (CDS)
      • AT3G14350.1 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon16 (3UTR)
      • AT3G14350.2 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon15 (3UTR)
      • AT3G14350.3 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon17 (3UTR)
    Flanking Genome Sequence: GT24123 - 5-prime edge 
    GGTAGCTCCG GCGTCAATGA TTACATGTAA ATTCTTTACC TGATGAGAAC 
    CACACAAAAA AAAACATAAA AATTTGCCCT TTTTCTCTTG TCTGCTCGGA 
    ATCTGGATGG GACGACAACA AGTGACAACC GAGGACAGAC AAAACAAAAC 
    AAAATCCTTT TTTTCTTTCG GTTTCCTAAA ACTGATGATG AAAGAATAAC 
    AACAACAACC ACCCTTCCCG CATTGTACAC CCCCATGTTT CTTTGTAATT 
    TGTTCCCAAT TTGTAGCTTT TTTTTTAAAA TCCCACAACA TGAACAAAAC 
    CCTTCCCTTT TGGGAGTTCC CAACCAAAAA CGGGATTATT CCCTTTGTAA 
    TTTTTTCCTT GTTTGAAAAA ATTTTATGTT AAAAAAGGGG AAAAAGAACC 
    ATTACAATTT GGGAAAATCT GCTGCTGAAT TGCAAAAACT TAAAAAGCAA 
    CGGGCGTTCT AAATTTCAAC AATCTTTGGA CTTTCCCCGG CAATCAAGGG 
    GACAACGGAA CCCAAAAAAC GTAAACCCCC GTAAAATAAA AAACCCCACC 
    GGAAACCCCC TAGGGACCCG TGGATTTTTC CCGGGGCCCC TTTTTAAGAC 
    CCGGGGGAAA AAA

AT3G14330.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1); Has 35559 Blast hits to 14091 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 58; Fungi - 108; Plants - 34937; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14350.1

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 7
Computational Description
STRUBBELIG-receptor family 7 (SRF7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 150168 Blast hits to 118851 proteins in 3450 species: Archae - 125; Bacteria - 15425; Metazoa - 44445; Fungi - 8889; Plants - 63588; Viruses - 356; Other Eukaryotes - 17340 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14350.2

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 7
Computational Description
STRUBBELIG-receptor family 7 (SRF7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14350.3

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 7
Computational Description
STRUBBELIG-receptor family 7 (SRF7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR