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GT24125

CSHL Arabidopsis genetrap mutant lines

Original: GT24125

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24125

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18796409 [Map]; Strand: c
      • AT2G45630.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G45630.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24125 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ACTGCCGTCG GTTTACTCAT 
    CGACGTCTTC CGCCGTATCT CCGCCGCCAA TCGGTTCGTT AAGCAACGGT 
    TTTGGCCAGT CAAAGGAGAT TATCCCCTCG GTTCTAAGGT TTGCAACATA 
    ACTTGTGAAA AAAAATCAAA TTAGCAACAA ATATTTAATG TTAATGGTTC 
    CCTCTAATTT GCAGTTGGGG AGAAAGCGAA TCGGAATCGT GGGACTAGGA 
    AGCATTGGCT CGAAGGTAGC GACAAGGCTC GAGGCCTTTG GTTGCCAAAT 
    TTCATATAGC TCAAGAAACA GAAAACCATG TGTTCCATAT CATTATTACA 
    TGGATATAGA GGAAATGGCA GCTACTAGTG ATGCACTCAT AATCTGTTGT 
    GAATTGAATG AAAAGACATT GCGTTTGATT AATAAAGATG TTCTTTCTGC 
    TCTGGGAAAG CGAGGAGTGA TCGTTAACGT GGCTCGTGGG GCTATAATCG 
    ACGAGGAAAA GATGGTGAGA TGTTTGAAAG AAGGTGAGAT TGGTGGTGCT 
    GGTTTGGATG TTTTTGAAGA TGAGCCTAAT GTTCCAAAGG AGCTTTTTGA 
    ATTGGATAAT GTTGTTTTCT CTCCACATAG TGCTTTTATG ACATTGGAAG 
    G

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18796319 [Map]; Strand: c
      • AT2G45630.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G45630.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24125 - 5-prime edge 
    CAGTATCTGC GACATCTTCT GGAGAAGCTT GAGCCAGCGT TGGCGACGGA 
    GATGCCTCGA CGACGGCATT CAACTAGGTC AACGTGGTCA ACGCCGGCGC 
    TAGTAGTAAC AACCAAGCGA AGATTAGGGA GGATGCGAAT CAGATCGGCT 
    GTGACCGGAG CAGCTACAGG GGCTATAATG GCGGAGATGG AGTCAGAGTG 
    ATAGGCCAAG AATTCAGGAA GAGGAAGCGG AGACTCGAAG GCTTTGAGGA 
    TCTCGAACTT GGTGGAGGCG ACGAATCCGT CGCCTAACAC AGCCATGGCG 
    TCGGGACGTT TGACGATGAG GACACGTGGC AGTTTCTCGG TGGAAGAGCT 
    CGTCGCCATC GTTGCGACTT GCGAGATTGA TCTGTTTTGC ATTATTATTA 
    AAAAATTGTT TTCAAAATTA TCTCACTTCT TTTTTCAAGT CACGCAAATA 
    ACACGACACG TTTAAGAAAT CCACCCACAT CACCATCATA CAAAAATCTT 
    CAAAACTAAG ACCTTTCTTT TTGTTGGGTC ACAAGCAAGA TTTCAAATCA 
    CAACCAAAAA AGCAAAAAGA ACAGAGCATG AATCTTCTAC CCATAAATAT 
    ATACAAGCCA CACGAATCCG CGATTCAAAT GTTTTAAAAG

AT2G45630.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 6623 Blast hits to 6621 proteins in 1548 species: Archae - 250; Bacteria - 4438; Metazoa - 370; Fungi - 171; Plants - 170; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45630.2

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, binding, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR