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GT24128

CSHL Arabidopsis genetrap mutant lines

Original: GT24128

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24128

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1137742 [Map]; Strand: c
      • AT5G04140.1 - [+] show detail - glutamate synthase 1
        Distance: 0; Region: exon31 (CDS)
      • AT5G04140.2 - [+] show detail - glutamate synthase 1
        Distance: 0; Region: exon30 (CDS)
    Flanking Genome Sequence: GT24128 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AATGACAGGA GGGTTAGCTT 
    ACCTTCTTGA TGAAGACGAC ACTCTTCTTC CTAAGGTTTC TTTCTCTCTT 
    TAAGGTGAAA ATATAGATTT TGTTCTTTCA AGATTCATCT GAACAATCTC 
    TATTATACAG ATTAACAGAG AGATAGTGAA GATCCAAAGA GTAACTGCGC 
    CTGCAGGGGA ATTGCAGCTG AAGAGCTTAA TTGAAGCACA TGTGGTAAGT 
    CATCTCAAAG ATCAAAGATC CAAAGAGCTA GTGGCTTGTC TTTGATGGCA 
    TCATATATAA ACTCTATTTT GTTTTTGGTT CATAGGAAAA AACCGGAAGC 
    AGCAAAGGCG CAACGATTCT GAATGAGTGG GAAAAGTATC TACCTCTCTT 
    CTGGCAACTG GTTCCACCGA GTGAGGAAGA CACTCCTGAA GCTTCTGCTG 
    CTTACGTAAG AACATCCACC GGGGAAGTCA CATTTCAATC GGCTTAGAGA 
    TCATTCAAGA GCAGGTTGTG GCAGTTGAAA CACAAGGATT GATATACATC 
    AATGGTGGAG GACTATGGAG AGCAGATTAA TGGAAAATCA TTATCATTCA 
    CATGTAGATC AAATGTGTGG GACAATATTC TTATTGTCTT GGGATCTTTA 
    CAACAATACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1137649 [Map]; Strand: c
      • AT5G04140.1 - [+] show detail - glutamate synthase 1
        Distance: 0; Region: intron30 (CDS)
      • AT5G04140.2 - [+] show detail - glutamate synthase 1
        Distance: 0; Region: intron29 (CDS)
    Flanking Genome Sequence: GT24128 - 5-prime edge 
    ACCAGCAGCA ACGTTTCTTC CCACCCTGTT TCAATGGAAA ACATTTCAAA 
    ATTTCATCAT TAGATATAGA TTTTCTCGTC CAGCGGTTTT TGGATTATCG 
    CAGTGTACTT ACTTTCCAAG CACGACTACA CAGCCACCAG TCATGTACTC 
    ACAGCAATGG TCTCCAGTGC CTTCAACTAC TGCTTCAGCG AGTGAGTTTC 
    TCACTGCAAA TCTCTCTCCA GCTTTGCCTC TAGCGAATAT CTGACCACCT 
    GTTGCACCAT ACAAGCAAGT GTTCCCGACT ATCGTTGCTT CCTCAGGCAC 
    AAACCCGATT TTTTCCACAG GAGTTACTAC TATTTCACCA CCAGCCATTC 
    CCTTCAAAAA GATCAACCAT TGCAAAAAAT TTCATAACAA GTAACAGTTG 
    ATGCAAAAAT TGATTTCAAT GTATATGGAT GCTAGTTTTA CCTTTCCAAC 
    GTAGTCATTT GACTCTCCTA TGAGCCGGAT GTTCATACCG GGAATCAAAA 
    AGCACCCAAA CGACTGTCCC GCGCTCCCTA AAAAACTGCA AACAAGGAAA 
    GAGTAAAGTT TGGTTTTAGC TATAACCTGA ACTGAAACAT ATAGATATCT 
    ACAAAGCTTC AGTGTTTATT TCTCACGTTA GGTTCACTTG TCCTGC

AT5G04140.1

Model type
Protein coding
Short Description
glutamate synthase 1
Curator Summary
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.
Computational Description
glutamate synthase 1 (GLU1); FUNCTIONS IN: protein binding, glutamate synthase (ferredoxin) activity; INVOLVED IN: positive regulation of glycine hydroxymethyltransferase activity, response to light stimulus, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 2 (TAIR:AT2G41220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04140.2

Model type
Protein coding
Short Description
glutamate synthase 1
Curator Summary
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.
Computational Description
glutamate synthase 1 (GLU1); FUNCTIONS IN: protein binding, glutamate synthase (ferredoxin) activity; INVOLVED IN: response to light stimulus, photorespiration; LOCATED IN: apoplast, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 2 (TAIR:AT2G41220.1); Has 17415 Blast hits to 17302 proteins in 2024 species: Archae - 267; Bacteria - 5686; Metazoa - 111; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 11012 (source: NCBI BLink).
Link
InterPro Scan - TAIR