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GT24129

CSHL Arabidopsis genetrap mutant lines

Original: GT24129

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24129

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21564244 [Map]; Strand: c
      • AT3G58210.1 - [+] show detail - TRAF-like family protein
        Distance: -177; Region: promoter
    Flanking Genome Sequence: GT24129 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AACGACCATA AGAAAAGTCT 
    AAACACTTTG TGCATCGTGA CTAACAGTGA AATCATCTAA CTACTTCATT 
    GGCTCTATCA GACTGGTCAC TGGATGAAGC CAAGGCAGTG AGATCTGTCT 
    TGAAATAAAC AAAAACTTGA TGAACTTAAT AGATGAAGCT CAAAACTGAA 
    AATTGAAAGC GTATTATACA CGTAATCAGC TCTTTGCCGG TGATGATCTG 
    TTTCTTATAT ACTTGATGAG CCAAAAGGCA TTGCTTTTTC ATTACTAGAC 
    GCATGCTTTT ACATTATCCT ACTGAGTCAT CATTACAAAA TGTCGAAATC 
    CTACTGAGTC ATCATTACAA AAAGTGGAAA CTTGATTCCG ACAAGGGTCA 
    CTCTACCTTC CTAAGTTATA AGGGGACTCT AATTACGATA TACTAAAACG 
    AACAGACAAG GACACACCAT GCAAAACCCA AGTCATCAAA CAAAATCATC 
    CAAAGTTAGA GAAGCTCGGG CAGCCAACAC TTTTGCCTTC TCTTTTTCCA 
    GCAAAGCTTC CCTGTCTAAG CACTTCTGCT TAAATTCCTT CAATTCCTCC 
    TCTAATTCTT GAATCCGGGT CTTACCAGTC TGCTCTACCA CTTTCTTTTC 
    TTTTACTTCC TTCACCTTCT TGTCCAACCA ATCCACCTTA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1137592 [Map]; Strand: c
      • AT5G04140.1 - [+] show detail - glutamate synthase 1
        Distance: 0; Region: exon30 (CDS)
      • AT5G04140.2 - [+] show detail - glutamate synthase 1
        Distance: 0; Region: exon29 (CDS)
    Flanking Genome Sequence: GT24129 - 5-prime edge 
    CATTAGATAT AGATTTTCTC GTCCAGCGGT CTTTGGATTA TCGCAGTGTA 
    CTTACTTTCC AAACACGACT ACACAGCCAC CAGTCATGTA CTCACAGCAA 
    TGGTCTCCAG TGCCTTCAAC TACTGCTTCA GCGAGTGAGT TTCTCACTGC 
    AAATCTCTCT CCAGCTTTGC CTCTAGCGAA TATCTGACCA CCTGTTGCAC 
    CATACAAGCA AGTGTTCCCG ACTATCGTTG CTTCCTCAGG CACAAACCCG 
    ATTTTTTCCA CAGGAGTTAC TACTATTTCA CCACCAGCCA TTCCCTTCAG 
    AAAGATCAAC CATTGCAAAA AATTTCATAA CAAGTAACAG TTGATGCAAA 
    AATTGATTTC AATGAATATG GATGCTAGTT TTACCTTTCC AACGTAGTCA 
    TTTGACTCTC CTATAAGCCG GAAGTTCATA CCGGGAATCA AAAAGCACCC 
    AAACAACTGT CCCGCGCTCC CTAAA

AT3G58210.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 1155 Blast hits to 996 proteins in 134 species: Archae - 2; Bacteria - 3; Metazoa - 121; Fungi - 102; Plants - 866; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04140.1

Model type
Protein coding
Short Description
glutamate synthase 1
Curator Summary
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.
Computational Description
glutamate synthase 1 (GLU1); FUNCTIONS IN: protein binding, glutamate synthase (ferredoxin) activity; INVOLVED IN: positive regulation of glycine hydroxymethyltransferase activity, response to light stimulus, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 2 (TAIR:AT2G41220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04140.2

Model type
Protein coding
Short Description
glutamate synthase 1
Curator Summary
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.
Computational Description
glutamate synthase 1 (GLU1); FUNCTIONS IN: protein binding, glutamate synthase (ferredoxin) activity; INVOLVED IN: response to light stimulus, photorespiration; LOCATED IN: apoplast, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 2 (TAIR:AT2G41220.1); Has 17415 Blast hits to 17302 proteins in 2024 species: Archae - 267; Bacteria - 5686; Metazoa - 111; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 11012 (source: NCBI BLink).
Link
InterPro Scan - TAIR