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GT24149

CSHL Arabidopsis genetrap mutant lines

Original: GT24149

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24149

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23400676 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24149 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACCTGTCGG AGCTGGAGGC 
    TCTGGCGCTT GAGATGCAAG GATATGGACG GCAACGGACT GATGGTGTGG 
    AGAGGGAGCT TGACGACGGG TTTTGGGAAG AGTTACTCAT GAACAATGAA 
    AACTCCGACG AAGAAGAGGC GAATGTGAAG CAAGATTAGG TTTTATGGGT 
    TCATCTCACT CGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23400593 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24149 - 5-prime edge 
    GCCGACAGGT GCTCCACCTC TTCCATTTTG ATCAAGCCAG CCTGATCAAT 
    CATCGCGGCC TCCTCTCGGT CTCTCTTCTG CTCGAAAATC TGCTGCAGAA 
    GGGAAGGATT CTCCACCGCA CGCATCAAGA AGGACATCAT ATGCCTCTGT 
    TTCATCTCAC TCGACC

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR