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GT24163

CSHL Arabidopsis genetrap mutant lines

Original: GT24163

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24163

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24095193 [Map]; Strand: w
      • AT1G64840.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT24163 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTACCT ACAATCAAAT CAAAGTTGGT 
    TTGCGATATA ATAAAAACAA AACTAACAGA ATGTCTAAGG TGTCCCAAAG 
    CGAGATTTTC GGATTAATTA GCGCTCAACT TGGATAGCCA AAACAGGAGA 
    TGTGTTGAGG ATCATCACAC GATTCTCCCT TGTGGCTCTC CAACAATTGA 
    GATCATCGTC CGCGCTTCTA GTATGTAGGC CATATTTATA GGCAAAAGTT 
    GGCTCATTGG TGAACAAAAT TGAGTTCCCA CTAAGACCAC AACCATCAGG 
    AAGTTCCTTA GCGGAGCAAG AGACATTTCC AAAGTATCCA ATAAAGAACA 
    CACGGTTTCC CAAATCGGTG ACCTCAACCC ATTTACCACC CTTTTCATCT 
    AGCCTACTCA CTATACATGT GAACCGGCTA AAATCTATTA CATCAAAATT 
    TGGGATGGTT ACCTCAACCA AAAAGAGTTC ATCATTACCA GATGCAACCA 
    GGTAGTTTAG TGGCTTGTGA GGCGAGGGTA TCAAGAGAGT TACCTCCAGC 
    GAATAAGGAT CAATAACGAA AGTATTTCTG CTAAAAAAGG ATGCATAAAA 
    TCATCCTCTA AAAGTGACTA AATCCGAGCA TATAGCATAT GGGACGTTCT 
    CAAGCCGCTT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10530546 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24163 - 5-prime edge 
    CCTGATTGTA GGGACTTTGT GATCTCTATT GTTACCCATT GTTCTGGAAT 
    TTGTTTCTTG TGTCACTGCG ATATGCTGAA GACTAGATCA TATATTCGGT 
    ATTCAAGTCT TAATATTTTC TTGTTCTAAA CTATTAATTT TTCCCACAAC 
    CTTGTCAATA CCACACAATA ATATGTCTCT GTAAAATAAT AGTGTGGATG 
    TATTCTTAGT ATCAGACGGT AATGGTTTAA AAAGAAGTAA GTTTTCTTCC 
    CAAAATCAAA TTGAACCTTG AAATTCTTGT ATAGGCATAT ACTCAATCTG 
    CATCATATGT AAAACTGACG ACATTTTGGT TTCTCGTAAA CCATTGATTT 
    ACGAGTGCGG TGGATCTTGT CCAACCCGAA TGGTTGAAAC CGGTTTGAAG 
    CTCCACTTGG AAGTGTTTAA AACATCAAAC TGTGGTTGGG GTTTACGTTC 
    TTGGGATCCA ATCCGAGCTG GAACTTTTAT CTGCGAGTTT GCCGGTGTGA 
    GCAAGACAAA AGAAGAAGTA GAAAAAGATG ACGAATACTT GTTCGACACA 
    TCTCAGATTT ATCATAGCTT CAAATGGAAC TATGAACTGG AGCTTTTGTG 
    TGAAGATGCT TGCGAACAAG TCTCTGAAGA TGCTAATCTT CCAACGCAAG 
    TCTTG

AT1G64840.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT2G24250.2); Has 216 Blast hits to 213 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR