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GT24172

CSHL Arabidopsis genetrap mutant lines

Original: GT24172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24172

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19673581 [Map]; Strand: w
      • AT2G48110.1 - [+] show detail - reduced epidermal fluorescence 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24172 - 5-prime edge
    TGCTCCGGAC CTCGCTCATT CCTCGTCACC CACATCTTCT GGGAAAATCA 
    CTCTCCTCTT TCATGGAAGC TTCTCGAAAA AGCTATATCC GTCAATATTG
    TCCCTCCCCT ACTTGTCCTC GCCCTTCTCT CCCCAAGGTA ACAATGAGTC
    GTCCGTCTAC TAATTGCTCT TCTAATGGTT CTCATCATTT ATGCTACTTG
    TTGAAATATT CCCCTCAAGC TGTCTGTAAT AGGCTCATTG CCGTTGGGTT
    ATCACTTTTC TTTTTTTATC ACCAGGCTCA TGTACAAAAT CAGTACAGTT
    TTTAATTCTT TATGGTTTGG TAATTTTAGG GTAATCCCAA ACAAAAAGCT
    TCATCCCGCA GCCTATAGGC TCTATATGGA ACTCCTCAAG AGACATGCAT
    TCTCATTCAT GCCTCTAATC AAAGCACCAG GATATCACAA GTGAGTTCCT
    TATCTCAGTT AAACCTTGTT TTCTCCAAAA AAGTTATTTA TTTTTGGCAG
    TGTAATAAGA TATTAATGTA AAAGTTTTTA CATGCGTAAT CATAATGCTA
    ATTTTTCTTC TCCTAGTTTG TAAAATGCAT ACTAATGTTG TTGTTACAAA
    TGAACAGAAC AATGAATTCC ATCGATGATA TCCTCCATCT TTCTGAAACC
    TTTGGTGTCC AAGATCAAAA ACCGGGAAGT ATTCTCCTTG CATTTGTCTT
    CTCCATTGTC TGGC

AT2G48110.1

Model type
Protein coding
Short Description
reduced epidermal fluorescence 4
Curator Summary
Encodes a novel protein of unknown function with homologs in non-seed plants. Sequence analysis predicts membrane spanning domains and a putative protein-protein interaction domain. Semi-dominant mutations display defects in phenylpropanoid accumulation suggesting a role in phenylpropanoid metabolism.
Computational Description
REDUCED EPIDERMAL FLUORESCENCE 4 (REF4); BEST Arabidopsis thaliana protein match is: REF4-related 1 (TAIR:AT3G23590.1); Has 140 Blast hits to 138 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR