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GT24180

CSHL Arabidopsis genetrap mutant lines

Original: GT24180

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24180

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3016408 [Map]; Strand: w
      • AT5G09730.1 - [+] show detail - beta-xylosidase 3
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT24180 - 5-prime edge
    CCCAGTTGAT AGGTAGACGA CACCGTTTCT GCCAATCCCT GAAGCGGCGT 
    TGTGTACTTG CATGGTACAC CTGAATATAA ATACAATCTC AGTTTCACAC
    ATTTTAAGCT TGAAAACTGA ATCATGGAGA CCGATAATCA CTTGTGTTTC
    TTTTATGTTT GTTTCAATTT ACCGTGGTAG TTTCCGATCA TTGTTTCTGT
    GGCATTGGCG TTTGGTCCGA TCACGGCTAA TGTTTTGATT GCGGAAGGTG
    AGAGCGGAAG CGAACCAGCA GAGTTCTTAA GCAAGACAAT GCCTTGTCTT
    GCGGCATCTC TTGCGAGTTC TTGGTTATCA GCGGTGCAAA CATCCTTAGG
    ACCAAGACCA CCGTAGAGCT GCTTCTTAGG GTCTCCATCG AAGAACCCTA
    AACGCATCAA AGTCGCGAAA TTGTTTGAAA TCGCTTTGTC AATAGCTGTT
    TCGTTTACCA AACCCGCCTT GACCGCTCCC ATCGCGTGTT GACCATTGAA
    ATGATCACAA TTCAAATCCA AACCTGCCAA TAGAGATTTG GCCACAGCTT
    CTTCTGGAGT CTTAGCATAG TGTTGTTTTC TGAACAACAC ATCTACCGAA
    TCACAATCCG AAACAATGTA TCTAACAAAA AAAAC

AT5G09730.1

Model type
Protein coding
Short Description
beta-xylosidase 3
Curator Summary
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational Description
beta-xylosidase 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9260 Blast hits to 8072 proteins in 1198 species: Archae - 63; Bacteria - 5600; Metazoa - 16; Fungi - 1569; Plants - 515; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).
Link
InterPro Scan - TAIR