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GT24204

CSHL Arabidopsis genetrap mutant lines

Original: GT24204

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24204

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3564195 [Map]; Strand: c
      • AT3G11380.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24204 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTGTCC GGCGACGAAC 
    CAAACTCTGC AGAGTCGGAT CGAAGCGGCT TCTCCTCATA AAGCACAAAT 
    CACAACGGTG CTTGAGCAAT GGCTACAGCA ACAACAACAA CAGGGGAAGC 
    AGTTAAACCC TTCGTTATTA AGAGGAATCG TCGAGAAGCT CAGAAGTTCT 
    AACCGACCTC GCCAAGCCCT AGAGGTATCA GACTGGATGG TCAAACAAAA 
    GATGTACAAT CTCCCGGAAG ACTTCTCAGC TAGATTTCAT CTGACTGAAG 
    GTTTTAAATT TGGAAGAAGC AGAGAAGTTC TTTGAGAGCA TCCCGGAGAA 
    TATGAGATTC GAGTCAATGT ACAATTCTCT ATTAAGAAGT TACGCAAGAC 
    AATCCGGGGA AAAAGCTCTG AAGAAAGCCG AATCTATTTT CAAGAAGATG 
    AAGAAGCTAG GGTTGCTCTT GAAACCTTCA CCGTACAACT CGATGACATC 
    ACTCTATAGC TCTCTCGGAA ACAGAGATAA AGTCAATGAG ATTCTTCGAG 
    AGATGAAGGA GAACAACGTT GAG

AT3G11380.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 4044 Blast hits to 2539 proteins in 107 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 3964; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR