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GT24211

CSHL Arabidopsis genetrap mutant lines

Original: GT24211

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24211

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9490679 [Map]; Strand: c
      • AT4G16860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT24211 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCCCTGAG GTAGATCAAT 
    ATTTGACTGA TGACCAAATT CTAGATATTG GAGATTACGC ATGCCTTTGA 
    ACGATTCTTC ATCTATTAAT AATAACGGCC TTGTCGAAAA TAATACCGTC 
    TCTGGCAAAC GTATTCCAAG AAGAGTTTCT GTCCCCTGAA AAAAAAATCC 
    GAAAAAAACT AATATAATCT TAACAATCGC AACCCTTTTT ATTTTTCTGA 
    CACATCAAAG CTACGTTTTA ATTACTCATG AGGCAACAAT TGCTTAAGTT 
    TATCAATCCC CAAATTACGA TTATATTAAT ATAAAGTCAT GCATTCAAAC 
    GGAGCTGCGA AAAACTTACA GTTTTCTCGG TCAATACTTC TTGAATATCC 
    TCAAAATTCG TCAAAAATTG ACGTTTTCCA GGATTACCCT TGGACTTTGC 
    ACGATCAATT TCTCTACCCA ATTTCTCTAG CAAATTGGGC ATCTCTATAT 
    ATCCCCCCGG GGTAATACGT ATGAGGGACT TCTTGAAAAA ATATGCGGAA 
    TTGTATTTTG GAAAAAGTAA AAGTAAGGGT AAAAAAATCA TGAGGAACAA 
    AAAAGCATT

AT4G16860.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.
Computational Description
recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 24682 Blast hits to 14766 proteins in 601 species: Archae - 8; Bacteria - 1131; Metazoa - 1818; Fungi - 127; Plants - 20736; Viruses - 36; Other Eukaryotes - 826 (source: NCBI BLink).
Link
InterPro Scan - TAIR