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GT24216

CSHL Arabidopsis genetrap mutant lines

Original: GT24216

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24216

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18217074 [Map]; Strand: w
      • AT4G39090.1 - [+] show detail - Papain family cysteine protease
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24216 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAATCTCAGG CGAGCGAGGC 
    GTCACCCGAA GTTGGATCCG TCGGCGACTC ATGGTGTTAC GCAGTTCTCA 
    GATCTGACTC GGTCTGAGTT CCGTAAGAAG CACTTGGGGG TTAGAAGTGG 
    CTTTAAGCTT CCTAAAGATG CCAACAAGGC TCCGATTCTC CCTACCGAAA 
    ATCTCCCTGA GGATTTTGAT TGGAGAGATC ATGGCGCCGT TACTCCCGTC 
    AAAAATCAGG TATTTTACTC GATGATGTCG CAAATTGATG TCTTATCGAA 
    TTCGTTGACT CTGGATCAAA CTTCAATTCG TTTCTTTGTG CTGATTTGGT 
    CTAATCCTGG TGTACAAATT AGGGATCTTG CGGCTCTTGC TGGAGTTTCA 
    GCGCCACTGG AGCTTTGGAA GGTGCTAACT TCCTCGCTAC CGGCAAACTC 
    GTCAGCCTCA GCGAACAACA GCTCGTCAAC TGTGATCACG AGGTTTGTCT 
    TTTCTTTCTC TTGAGTCTTG GGATGAGTTT GAAGGACACT GAACATGACT 
    GTGTTGATGT TTGATCACTT ATCAATCAAT ATGTTATCCT AGATATTCAC 
    AGTTCTCTCC GGATATGTTG AGATGATAAA ACTCACTACT TAGTTCAGGT 
    TGCTTACTTT TA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18217177 [Map]; Strand: w
      • AT4G39090.1 - [+] show detail - Papain family cysteine protease
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24216 - 5-prime edge 
    ACCGAGAATC TATAGTCATG CTCCTCGTTG GAAGCGTAGA CCTTCCCGAA 
    CTTCCGCTTG AAGAGAGAAA AGTGATCCTC TGAGGTCAAA ACCTGAGGCT 
    CGGCTCCACC AACCACCTGA CGGATCACGA GATCATCGCC GTCGTTGACA 
    TCAGACGACG AAACCGAGAC GATAAAGAAA GACAAAACGA AAACGGAGAA 
    ATAAAGCTTA AGACGATCCA TTTGATTTGC AATTAGATTG AAGGAAGCAG 
    AGAAGGATTA ATATAGATAG AACCCTCAGT AGATTATCAC ACGCAACGTG 
    AATGTATAGG TGTATGTATA GGTCTCTGCT ACACGTCTTT TTCCCTTTGG 
    AGATTAGCTT TCGGTTTCTT TTAAGATAAT TTTAAAAGAT ATTGTTGTCA 
    TCATTATTAT AGTCGGAGAA AAAATCGGAA GATATTTATG GTATTTATTA 
    TTATTTTAAG ATGCCTTATC CAAGGGGAAA GGAGAGAGTT AACCAATGAT 
    GTAAAACCAC GTGTTAATCA TTGAATGGGT ATGGAGTAAT GGAAGGGGAT 
    AGGTTCAACT TGTTGTTAGC AGGGCCGTGT TGTCTTGGAA AAAATTAA

AT4G39090.1

Model type
Protein coding
Short Description
Papain family cysteine protease
Curator Summary
Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
Computational Description
RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR