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GT24224

CSHL Arabidopsis genetrap mutant lines

Original: GT24224

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24224

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23105867 [Map]; Strand: w
      • AT5G57090.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 1132; Region: intergenic
      • AT5G57100.1 - [+] show detail - Nucleotide/sugar transporter family protein
        Distance: 435; Region: intergenic
    Flanking Genome Sequence: GT24224 - 5-prime edge
    TGCTCAGTGA CAGCTCTTGT CTCTCTAGGC ACCTTACTAT TATAATGTCT 
    CATCGTGAAT CTTATCTTGT ATAACAAATT AATGTTCATA TTGTTTCAAG
    TACATTATAC CACATGTTTA TAAACAAACT TGCATAAATA CCTTAGAATT
    TTATCATTTT TGCTAATGCC AAAAATTATC AGTCTCTTAC TAAAAGCGAT
    CGAAAATGAA TCAGCGTTAT GAGCTTCTTT TTTGTTCCAT ATTGGATCAA
    ATCATCAATT ACTAATTAAA AGCAAAATGA TACAAATCCT CAATACGTAA
    AACTAAAACC GGCCCATTTA ACAAATTCAG CCCATAAGGC CTAAATCATT
    TCATGACATT TTGGTTTTGT TTTGGTCTAA AATCATTTTT AAAATTGTTA
    ATTTTTTTGC TCTTCTTAAA GTTTATGTAA ATTATTAAAA GTTGTTTTCT
    AAACAGTTTC ATATAAATTT CATCCTTTTT CAAATGACAA AAAAAACAGT
    TTCATTAAAT TTCAAGATAT TCAGCACATA AACCCCCCCC AAAATTGACA
    GAAAAAAAAA AAAACAAAAA CATTTGAGGA CAAGACAAAA AAAAACAAAA
    CCAAA

AT5G57090.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.
Computational Description
ETHYLENE INSENSITIVE ROOT 1 (EIR1); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57100.1

Model type
Protein coding
Short Description
Nucleotide/sugar transporter family protein
Computational Description
Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT5G55950.1); Has 2192 Blast hits to 2189 proteins in 223 species: Archae - 0; Bacteria - 8; Metazoa - 527; Fungi - 398; Plants - 1015; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Link
InterPro Scan - TAIR