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GT24225

CSHL Arabidopsis genetrap mutant lines

Original: GT24225

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24225

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77898 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2514; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2535; Region: intergenic
    Flanking Genome Sequence: GT24225 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGTCGTCCTC GATTTTAATG 
    TTCTGTCTTT CTCTGCATTC ATAGTTTATC TTATTTCATT TCATATCCTT 
    ACTTCATTTT TCTACAAACA ATAATTTCTA GACGAATTGA AACAAATTTC 
    CAAAACTTTA TGAGTATATA TAGGATATTT TTAGTGGCAA AGGACGACTT 
    AAATTGTAAC GAAAAGAATT TGAACTTTTT TCCATTAGTC CCTACGATGA 
    ATATTTCATC CTATAGAACA TCATATGAAT TGATTACTTA ATGAAGTTAA 
    ATTTTTGAAA ACTCTATTAG GGACAATGTC CCACATCGGA AGTTGAGTAG 
    GATCTTAAGT GGTATATATA AAATATGGGC CTCTCCACCT ATTGCCAATT 
    AGTTTTAGGT TGGAAGCCCA CAGTCTGATA TGATATCAGA GCTCGATCCG 
    CACATACTCA ACCCGATCCA CATCGGTCCG GCTCAATACT TGGCCCGCCG 
    ATCCATGCCC AAACATATCG AGATCAATGG CTAGAAGCGC CATCATCTCG 
    AGGGGGCGTA TTAGGGACAA TATCCCACAT CGGAAGTTGA ATAGGATCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78032 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2648; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2401; Region: intergenic
    Flanking Genome Sequence: GT24225 - 5-prime edge 
    GCGAAATCAT GTAACGGAAA TGAAAGCAAA AAAGTTGAAC AAAGGAGAAG 
    CTTATTTAAG AACATATACT GTTTTATTTC CGATTTGACC ATTCATATAT 
    CTCAATCAAC CTTACACACA AACATTATAT ATAAATGTAC CGAGCTAGCT 
    AGGCATGTAT AGTATGTCAG CGACATGATC TCTCTCTTTT TTTCTTTTTT 
    TTTACTTTTA CGGCACTTTC CCTCTTGGGT TATTTTTTGT TCTAAGTATT 
    TTCAGGTCAA AACCTATTGA ACAAAAATCT TTTTTAAAAG TGTTATTGAA 
    TTTTTCCCCC GCCTGAAGGG GTGAAAAAAA AAAATGTCTT TTCTCACACA 
    AACCCCTTGG AAAACAACCA ACATCTGAGT GTATATATGC CCGGGTATAT 
    GTCTCTCTTT AATTTCATAA AAATTCCCGT TTCAAGCCAC TTATCTTCCC 
    CAGGCCCCCG TTTTTCATTT CCCTCAAA

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR