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GT24230

CSHL Arabidopsis genetrap mutant lines

Original: GT24230

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24230

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21888373 [Map]; Strand: w
      • AT5G53902.1 - [+] show detail - U3B; snoRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT5G53905.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24230 - 5-prime edge 
    TTTCTCCCCT GACTGATTTA GAGATCATTC TTGAATTTTG GAACTAGAAT 
    CTATAATGAG CCCTTAACCC TGGTTGATGA ACCATGACCG TGCGGCTAGA 
    GCGTGATTGA CGGCTACGAT CGTCCTCGGA CGCATCCAGT GCTGTAGAGG 
    ATCGTTACTC GGCTCGGTTT CTACCTTGCC GGGGTGGTCG CACGGCGGTC 
    TGACAGGTCC CTTTCCTTTT TTCTTTTTTT TGCCATAAAC TTAAATTTGT 
    ATATCGATCA TTGTAGATAT TGAAAACCTA AAACAAACCA ACATCCATGT 
    GAATGTCTTT CATGACTGAT TTAGAGATCA TTCTTGAATT TTGGAACTAG 
    AATCTATAAT GAGCCTAAAT TAAAACATTG GGAATGGTCC CATAAATACT 
    TCACTTGTGT GTAGGATCGG CTCTCTTGAT GCGAGAATAT TCACTTTTGA 
    GAAGAGGAGG GAAGAACGGA TTTAGTGGAA ATATTTGTGG GCAACACTTT 
    GCATCCTTTG CCGACAACGT CGTGCAACAC ATTAATTGGT CCAACATTAT 
    CAAACTTTCT TGTAAAAACT GATTTATAGA TTTCAGTTAC GCAACCTTAA 
    ACATTGACAA GTGATGACAA ACTTTTTTTG AGATCGATGG GATAACCGGG 
    G

AT5G53902.1

Model type
Small nucleolar RNA
Short Description
U3B; snoRNA
Curator Summary
U3 small nucleolar RNA
Link
InterPro Scan - TAIR

AT5G53905.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54062.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR