1. Home
  2. Mutant Lines
  3. GT24232

GT24232

CSHL Arabidopsis genetrap mutant lines

Original: GT24232

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24232

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20879533 [Map]; Strand: c
      • AT3G56290.1 - [+] show detail - unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; ...
        Distance: 0; Region: exon1 (CDS)
      • AT3G56300.1 - [+] show detail - Cysteinyl-tRNA synthetase, class Ia family protein
        Distance: -636; Region: promoter
    Flanking Genome Sequence: GT24232 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGAAG AGGCAGTGCT 
    CTAAAACCCA TCTTATGGTT TTCACTCAAA TTCCAAGTAA AGAGATTCCA 
    AATTGTGCTA CATTTTTATA AATTTGGCAA AACATACATG TGGTTGTGTG 
    GTGGGGATTG AAATGTAACG GGGGCCACAA ATGAAGAATA TTGCTGTGAG 
    TCTGTGACTA TTAATGTGTT TACGTGGGAG TTTAGTGATC TGATGATATA 
    TGAGGTGTCC AATTTTGTTT ACTTAATTAC TAGTGTGTAT TTGCTAATAC 
    GAGATTTTCT TTGTACATCT CAAAGATCAA CTAAAGTCAA TAATATTCGC 
    AGCCATATAA ATTTGTATTT TTTGGTAGAC AAAAAATCAT AAATTATTTC 
    CTAAATAGAA AAATGGAAAT CTTTCTAAAA TCAAGGTTAT TTAGCAATTT 
    CCTTTATTTC CTTTGTTTTA AAGTCAAAAA TATTTTTTTG GGGGTCAAAA 
    AATCAAATAT AATTTTCCTA TATAGAAAAA GGAAAATCTT AAAAAAATCT 
    AGGGCTATTT AAGCAATTTA TATTTTCCTA AACAAAATTC CACCCTGCCC 
    CCGGTAAAAA TTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20879462 [Map]; Strand: c
      • AT3G56290.1 - [+] show detail - unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; ...
        Distance: 0; Region: exon1 (CDS)
      • AT3G56300.1 - [+] show detail - Cysteinyl-tRNA synthetase, class Ia family protein
        Distance: -707; Region: promoter
    Flanking Genome Sequence: GT24232 - 5-prime edge 
    TCTCCCTGGG CCTCTTCACA CAGCAGTGGG GTTCATCTCA CTCGACCAAA 
    GAATCCATCT CACGAACCTC GCCCAGGATT TTCCGGAACC CTAAATGGGC 
    CGTTGCCTCA CCAAAGCAGG AAAAAAATGA GGATAAAAAA AAAAAGGAAA 
    AGGAAACTTC TTTGTTTACT CATTTAACGG AGGCCTGGAA CTTCCCCCAA 
    GTTCAATCGA AAAAAAACCC TAACCTTCCC TACAAGGCTC GAAAAGCCCC 
    CAAATCGGGC CCCAAAATGA CCCAAAAACA GGTCCGCCTT CTTTTTTACC 
    CCCCCCCGGA GGAGTTTGGA ATGAAACAAA TTATTGGGGA GGACCCGGGT 
    TCAATTTTCT TACCTGGAAA AAAAAATTCA AACTTATGAA ATAATGGAAA 
    AACCAAAAAC CAAATAATAG GTTTGGAAAT TATCCTAATG GAAATGCAGA 
    AGGGGCCATG GAGGAAAAAA TTCGAAGAAC CATACAGGGA CTTTTTTAA

AT3G56290.1

Model type
Protein coding
Computational Description
unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56300.1

Model type
Protein coding
Short Description
Cysteinyl-tRNA synthetase, class Ia family protein
Computational Description
Cysteinyl-tRNA synthetase, class Ia family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 11222 Blast hits to 10904 proteins in 2870 species: Archae - 213; Bacteria - 6026; Metazoa - 414; Fungi - 276; Plants - 133; Viruses - 3; Other Eukaryotes - 4157 (source: NCBI BLink).
Link
InterPro Scan - TAIR