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GT24239

CSHL Arabidopsis genetrap mutant lines

Original: GT24239

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24239

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18216536 [Map]; Strand: w
      • AT4G39090.1 - [+] show detail - Papain family cysteine protease
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT24239 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTACAC TTATCAATCA ATATGTTATC 
    CTAGATATTC ACAGTTCTCT CCGGATATGT TGAGATGATA AAACTCACTA 
    CTTAGTTCAG GTTGCTTACT TTTAATGATC TTGTTTCTCG TCAGTGCCTA 
    GGGAAGATTC ATAATATGAC CATAATGGTT AACATGATCT CTGTGAAACT 
    AATCTGATAA TTGTTGCTAT CATCTCCTTA TGCAGTGTGA TCCCGAGGAG 
    GCAGATTCCT GCGACTCTGG TTGCAATGGT GGGCTAATGA ACAGCGCTTT 
    TGAATACACC CTCAAAACCG GAGGGCTCAT GAAAGAAGAA GACTATCCTT 
    ACACCGGAAA GGACGGCAAG ACCTGCAAGC TAGACAAGTC CAAGATCGTT 
    GCCTCTGTCT CCAACTTCAG TGTTATCTCC ATTGATGAAA AACAGATTGC 
    TGCAAACCTT GTCAAGAACG GACCTCTTGC TGTAGCCATC AACGCTGGCT 
    ATATGCAGAC TTACATTGGA GGAGTCTCAT GCCCTTACAT ATGCACCAGG 
    AGGCTCAACC ACGGTGTCTT ATTGGTTGGC TATGGAGCGG CAGGTTACGC 
    TCCGGCTAGG TTCAAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18216630 [Map]; Strand: w
      • AT4G39090.1 - [+] show detail - Papain family cysteine protease
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT24239 - 5-prime edge 
    GTGATCAAAC ATCAACACAG TCATGTTCAG TGTCCTTCAA ACTCATCCCA 
    AGACTCAAGA GAAAGAAAAG ACAAACCTCG TGATCACAGT CGACGAGCTG 
    TTGTTCGCTG AGGCTGACGA GTTTGCCGGT AGCGAGGAAG TTAGCACCTT 
    CCAAAGCTCC AGTGGCGCTG AAACTCCAGC AAGAGCCGCA AGATCCCTAA 
    TTTGTACACC AGGATTAGAC CAAATCAGCA CAAAGAAACG AATTGAAGTT 
    TGATCCAGAG TCAACGAATT CGATAAGACA TCAATTTGCG ACATCATCGA 
    GTAAAATACC TGATTTTTGA CGGGAGTAAC GGCGCCATGA TCTCTCCAAT 
    CAAAATCCTC AGGGAGATTT TCGGTAGGGA GAATCGGAGC CTTGTTGGCA 
    TCTTTAGGAA GCTTAAAGCC ACTTCTAACC CCCAAGTGCT TCTTACGGAA 
    CTCAAACCGA GTCAAATCTG AAAACTGCGT AACACCATGA GTCGCCGACG 
    GATCCAACTT CTGGTGACGC CTCGCTCGCC TGAAATTCGC TTTGAAAACC 
    GAGAATCTAT AGTCATGCTC CTCGTTGGAA GCGTAAACCT TCCCGAACTT 
    CCGCTTGAAG AGAGAAAAGT GATCCTCTGA GGTCAAAACC TGAGGCTCGG 
    C

AT4G39090.1

Model type
Protein coding
Short Description
Papain family cysteine protease
Curator Summary
Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
Computational Description
RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR