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GT24271

CSHL Arabidopsis genetrap mutant lines

Original: GT24271

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24271

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17622314 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24271 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ATTATTTAGT ACTACATAAG 
    TTGAACATAG AAATGGAGAG AGCACCATGG TTAGAAGCAT GGCGCATCGA 
    AGAAAATTCA GTTCAACATT TTAATCAGTA CTTGTGTTTT AGGTTCTATA 
    CTGAGTTTTC AGTGTGTTCT TGGAGAACTA TCCATGTAAC CAATGGAATA 
    AAGCAGGAAT CTATTGTTAA TGCACGAATT AAACAAGTAC GAAAATGGGA 
    TCTCTAGGGA AGGAAGAAGA ATCTTTCTAT TAATGACGAG CCCGCGACTT 
    AGGTGAATTG GACGGATTAC AAAGGATGAT TTCTTCAACA AGCATAAATG 
    GAGTAAAAAC GAGCCGATTG TAAATGAAAG ACGAGCTTGA GGCCGGAAGA 
    CGATCTTGAT AGCTGAACCT TGTAAAAGGC TGCCTACGTA CCCTTAAAAA 
    GGGATCAAGC CACACGTAGT TCATCTCACT CGACCAGATC GTACCGTTAC 
    CCGACCGGAT CGTATCGGTA TATTCATCTC ACTCGACCAG ATCGTACCGT 
    TACCCGACCG GATCGTATCG GTATATTCAT CTCACTCGAC CAGATCGTAC 
    CGTTACCCGA CCGGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22223812 [Map]; Strand: w
      • AT3G60160.1 - [+] show detail - multidrug resistance-associated protein 9
        Distance: 0; Region: exon11 (3UTR)
    Flanking Genome Sequence: GT24271 - 5-prime edge 
    AATAACTAGT TAGACTTTCA ACTTAAGCTT AACTGTGGAA TTCATATTTC 
    GTTTTCTCTG CAAAAGATCA TCCATCTTTT AGTGGTGTTT AGCTGAGAAG 
    ATCATTCGAG CCGGCAAAGT GATTAGATCT CAGCGAATAC TCTTTTATGA 
    GTTTGGAGAA GAAAGAATCT TCTCTCTGTA GCAGTTTGGC AGGTGAATCA 
    AACTCTGCGA TTCGTCCTGC TCATAGAAAA GTGACTTAGA CCTCATAATT 
    ATGTGTGTGA ATGTATATGA AAACACATGT ATATTGTTCT TACCATCACT 
    CAGAACCAGA ACAAGATCAC TCTCTATCAC TGTGTGGATT CTGTGTGCAA 
    TAGTCACCAC TGTCCGATCT TTAAACTCTT GATTGATGAT CTTTTGTATT 
    ACACCATCAG TTGCAGAATC AACAGAAGCA GTGGCTTCAT CAAGCACCAG 
    AATGTTGCTT TTCTTCAACA ACACCCTCCC AAGACAAACT AACTGTCTCT 
    GCCCTACGCT CCAGTTTTCT CCATTTTCAA CCACTGTTAC ATACATTCAA 
    GAATCTTAGC TTTCATTGTC CAAAAAACAT TAACTTAAAA ACGTTTCCTG 
    ATAATGATTT CAAAAACCTC ACCTGTAGCA TCCAGCCT

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G60160.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 9
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 9 (MRP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 15 (TAIR:AT3G60970.1); Has 679468 Blast hits to 355652 proteins in 3947 species: Archae - 12543; Bacteria - 548953; Metazoa - 12500; Fungi - 7906; Plants - 6622; Viruses - 19; Other Eukaryotes - 90925 (source: NCBI BLink).
Link
InterPro Scan - TAIR