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GT24273

CSHL Arabidopsis genetrap mutant lines

Original: GT24273

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24273

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 270972 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT24273 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CAAGATGAAA TATCAGCTCT 
    TGTGAGTAGT TACCTCGGCC CGTCAACATC TTTTCCTCAT CGCTCAAGAA
    GATCCCCGGA ATATATGGTT CCACTTCCAC ATGGTGGGTT AGGAAGAAGT
    GTATATGCAT ATGAACATCT GGCCCCAAAT TCATACTCTC CAGGTCACGG
    ACATAGACTT CATCGACAGT ACTCTCCGTC TTTGGTTCAC GGACAGAGAC
    ATCCACTACA GTACTCTCCT CCAATTCATG GACAACAACA GTTACCATAT
    GGTATACAAA GGGTTTACAG ACATTCACCA TCTGAAGAAA GATATTTGGG
    TTTATCCAAT CAAAGGTCTC CTCGCAGTAA CTCATCATTA GACCCCAAAT
    AGGAGGAATG TAAATTTGTA ACAAAGCTTT TTGTTTTTGC TTAAGTTAGT
    CATTTATTTA ACTCCCAACA GTCTCAAAAT TTAATTTAAT GTTTGGGGCT
    TAAGAATGCA AATTTTTTTG CTCCTGTAAT TGACATTTAA AATGCTAATG
    TTATTGCTTC AAAGGTTTTA GTCAACC

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR