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GT24275

CSHL Arabidopsis genetrap mutant lines

Original: GT24275

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24275

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22223766 [Map]; Strand: c
      • AT3G60150.1 - [+] show detail - Protein of unknown function (DUF498/DUF598)
        Distance: 254; Region: intergenic
      • AT3G60160.1 - [+] show detail - multidrug resistance-associated protein 9
        Distance: 37; Region: intergenic
    Flanking Genome Sequence: GT24275 - 3-prime edge 
    GTTTTCATCC CAACATATGT AGTACTAAAT AACTAGTTCG ACTTTCAACT 
    TAAGCTTAAC TGTGGAATTC ATATTTCGTT TTCTCTGCAA AAGATCATCC 
    ATCTTTTAGT GGTGTTTAGC TGAGAAGATC ATTCGAGCCG GCAAAGTGAT 
    TAGATCTCAG CGAATACTCT TTTATGAGTT TGGAGAAGAA AGAATCTTCT 
    CTCTGTAGCA GTTTGGCAGG TGAATCAAAC TCTGCGATTC GTCCTGCTCA 
    TAGAAAAGTG ACTTAGACCT CATAATTATG TGTGTGAATG TATATGAAAA 
    CACATGTATA TTGTTCTTAC CATCACTCAG AACCAGAACA AGATCACTCT 
    CTATCACTGT GTGGATTCTG TGTGCAATAG TCACCACTGT CCGATCTTTA 
    AACTCTTGAT TGATGATCTT TTGTATTACA CCATCAGTTG CAGAATCAAC 
    AGAAGCAGTG GCTTCATCAA GCACCAGAAT GTTGCTTTTC TTCAACAACA 
    CCCTCCCAAG ACAAACTAAC TGTCTCTGCC CTACGCTCCA GTTTTCTCCA 
    TTTTCAACCA CTGTTACATA CATTCAAGAA TCTTAGCTTT CATTGTCCAA 
    AAAACATTAA CTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17622249 [Map]; Strand: c
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24275 - 5-prime edge 
    CCTGGTTGAC ATAGAAATGG AGAGAGCACC ATGGTTAGAA GCATGGCGCA 
    TCGAAGAAAA TTCAGTTCAA CATTTTAATC AGTACTTGTG TTTTAGGTTC 
    TATACTGAGT TTTCAGTGTG TTCTTGGAGA ACTATCCATG TAACCAATGG 
    AATAAAGCAG GAATCTATTG TTAATGCACG AATTAAACAA GTACGAAAAT 
    GGGATCTCTA GGGAAGGAAG AAAAATCTTT CTATTAATGA CGAGCCCGCG 
    ACTTAGGTGA ATTGGACGGA TTACAAAGGA TGATTTCTTC AACAAGCATA 
    AATGGAGTAA GAACGAGCCG ATTGTAAATG AAAGACGAGC TTGAGGCCGG 
    AAGACGATCT TGATAGCTGA ACCTTGTAAA AGGCTGCCTA CGTACCCTTA 
    AAAAGGGATC AAGCCACACG TAGTTCATCT CACTCGA

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G60150.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF498/DUF598)
Computational Description
Protein of unknown function (DUF498/DUF598); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF498/DUF598) (TAIR:AT2G44525.1); Has 753 Blast hits to 753 proteins in 341 species: Archae - 0; Bacteria - 405; Metazoa - 118; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60160.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 9
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 9 (MRP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 15 (TAIR:AT3G60970.1); Has 679468 Blast hits to 355652 proteins in 3947 species: Archae - 12543; Bacteria - 548953; Metazoa - 12500; Fungi - 7906; Plants - 6622; Viruses - 19; Other Eukaryotes - 90925 (source: NCBI BLink).
Link
InterPro Scan - TAIR