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GT24302

CSHL Arabidopsis genetrap mutant lines

Original: GT24302

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24302

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 92993 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -930; Region: promoter
    Flanking Genome Sequence: GT24302 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTGATTAC ACCGTACCTT 
    CAATTACTCC AAATATCTTA CAAGCATGCT TTGACTTTGT GAGCCTCGAT 
    TGGAACTGAT TGTTCAACCA ATAGTCGTGT TTTACAGTGA CTCATCAAGG 
    TTTGGTTTAC GTCGACCCTT CATCTCACTC GACCAAATCG TATCGTTACC 
    CGACCGGATC GAATCGGTAT ATTCATCTCC CTCGACCAGA TTTTAACGGT 
    ACCCGACCGG ATCGTATCGG TATATTCATC TCACTCGACC AAATCGTATC 
    GTTACCCGAC CGGAT

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR