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GT24314

CSHL Arabidopsis genetrap mutant lines

Original: GT24314

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24314

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 288434 [Map]; Strand: w
      • AT4G00700.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24314 - 3-prime edge 
    GGAGAGGTTT TGTGTATTCT CATCAGGATA CTGGAGACAG ATGTGCAGGT 
    GAATCTCACC GCTAATTGAA TCTCTCCTCT TTTCTTAAGA CCAGTAGGTT 
    GTATAGAGAA GTAAAGGGTA AGCGTGCGTG TACACACCGC CCGTCTGAAG 
    AGTCGAGAGT CTAATGCGGA CTTTCCCAAA CGGCTGATCT CTCTTGTTTC 
    CGCCTTCTCC TGCTGCGAAA TGAGCGTTGT CTAAGACGCA TATGGTTAAA 
    ACCGTTGCAG GATCAAAAAC CTCCCATGTG TATTGCTCAT TGTACTTTGG 
    ATTCATGCTG TTGATCACAG TTCGTGATCG AACCCATTTG TGACCGTATT 
    TGGCAGCGAC GTAGGTGTCC GAAGTACCTT TCCCTTCCCA AGTTTTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26142837 [Map]; Strand: c
      • AT1G69530.1 - [+] show detail - expansin A1
        Distance: 0; Region: exon3 (CDS)
      • AT1G69530.2 - [+] show detail - expansin A1
        Distance: 0; Region: exon4 (CDS)
      • AT1G69530.3 - [+] show detail - expansin A1
        Distance: 0; Region: exon3 (CDS)
      • AT1G69530.4 - [+] show detail - expansin A1
        Distance: 0; Region: exon3 (CDS)
      • AT1G69530.5 - [+] show detail - expansin A1
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT24314 - 5-prime edge 
    TCTGTCCCCA GTTTCTTGAC ATCGCTTGCC ATCCTGTTCT TGAACCTTTA 
    ACCATCGCTG AGTGAACATC TCCGGCTCCT CCGACGTTAG TGATCAGAAC 
    TAGGTTGAAG TAAGAGTGTC CGTTTATCGT AAACCTTATT CCTCCTCTTC 
    TCACGCATGG AACTCTGTTA ACACACAACA ACAAAAAGAT GAAAACGGAG 
    TAAGATTCCA ATAATTCACT ATACTCTGTT TTGGAAGAAA AACAGAGCAG 
    CTCTGTTTCA TGTTCAATTT TTATTCAGTC GCATACTCTG TTTTAGGGTA 
    AAAACAGAGC AGCTCTGTTT TTTAGGTTTT ACCTTCGGTA AGCGACGGGA 
    ACAATGCCGG CTCTGTATTG AGCGATGCGT TGAAATACGG GCTGAAAGAG 
    ATCAAAATGT TGCTGAGGAG GGTTACACCA ACCTCCTGCG TTGTTCGGTA 
    ACGCGTTGTT AGGCGGGCAA AAGTTTGTGG CTGTGACGAC AATTGAGCCA 
    GGGAGACACC ATTTTCCATC GTTTTGGCAT CTTATCTCGA AACAAGCACC 
    ACAACTTAAA CCATTATTGA ATAGAGCCGT GCTTAGCGCC GCCGTGTTGG 
    TTCC

AT1G69530.1

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2218 Blast hits to 2214 proteins in 171 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.2

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Barwin-related endoglucanase (InterPro:IPR009009), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2218 Blast hits to 2214 proteins in 171 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.3

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.4

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69530.5

Model type
Protein coding
Short Description
expansin A1
Curator Summary
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1).
Link
InterPro Scan - TAIR

AT4G00700.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR