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GT24318

CSHL Arabidopsis genetrap mutant lines

Original: GT24318

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24318

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68264 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2785; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1009; Region: intergenic
    Flanking Genome Sequence: GT24318 - 3-prime edge
    TACCGACCGT TACCGACCGT TTTCATCCCT ACCCTTCATC TCACTCGACC 
    ACCCCACCCC ACTCAATCGG ATAGTTCGTA TGATGAACAG AATCGTGCTT
    TGCCATAATT AGAGGAAGAA ACAAAAAAGT CAGCTAAATA TATTAATCTT
    GTCAAACATT AATTTATATT GAAGGATGAC GTGTTAGAGT TTGTATGCAT
    ATAACCATAT ATAAATGATT GCGCGTCGTT CATTTTGTAT TAGATTTTAG
    GATAATGATT AGTTAGATTA GACAAAAATT GATCAATTAT TATTAGGAGA
    TCACATGGGA CTGATAAGGA TAAAGAAAAA TAGAGAAAAT TTCTTCATCT
    CACTCGACCA AAAGTAATAA TAATTATGAT TAAAAAAAAA ACCAAGATCG
    GGGGGAAGTA ATTAACAATT ACCCCAATAT AAAGTTGGGA AAGGAATTTC
    CTTATTTCTT TAATCATAAA CATTTCTTTA AAAAAAATCA AACTCTCTTT
    TGATCATTGA CAACCCTTTA TTATGATTCG CCAACAAAAA AAAAAAGAAA
    AAAAAAAACC CTTTTTTTTA TCGAAGGGCC CCCCC

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR