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GT24338

CSHL Arabidopsis genetrap mutant lines

Original: GT24338

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24338

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6101223 [Map]; Strand: c
      • AT4G09649.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -525; Region: promoter
      • AT4G09650.1 - [+] show detail - ATP synthase delta-subunit gene
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24338 - 3-prime edge 
    GTCCTCGTCG ACGCGAATCG GATCAATATC GTGACGGAGA TCGTTAAGGA 
    GTTTGAGTTG GTTTACAATA AGCTAACGGA TACACAATTG GCGGAGGTTA 
    GGTCGGTGGT GAAATTGGAA GCGCCGCAAT TAGCTCAGAT TGCGAAACAG 
    GTTCAGAAGT TAACCGGAGC TAAGAATGTT CGGGTTAAGA CGGTTATTGA 
    TGCGAGTCTT GTGGCTGGTT TTACGATTCG GTATGGTGAA TCCGGTTCGA 
    AGCTTATTGA TATGAGTGTG AAGAAACAGC TTGAAGATAT TGCTTCTCAG 
    CTTGAACTTG GTGAGATTCA ATTAGCTACT TGAGATTTGG GAAAAATTGT 
    ATAAGAGAAA AATTTGAGAA TCTTTTTTTT TTTGGGGCAG TTTAATTTTT 
    TTTTCCCCCC CCCTTTTT

AT4G09649.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09650.1

Model type
Protein coding
Short Description
ATP synthase delta-subunit gene
Curator Summary
Encodes the chloroplast ATPase delta-subunit.
Computational Description
ATP synthase delta-subunit gene (ATPD); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, photosynthetic electron transport in photosystem I, photosynthetic electron transport in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit, conserved site (InterPro:IPR020781), ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 4372 Blast hits to 4372 proteins in 1436 species: Archae - 0; Bacteria - 2635; Metazoa - 155; Fungi - 114; Plants - 153; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
Link
InterPro Scan - TAIR