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GT24344

CSHL Arabidopsis genetrap mutant lines

Original: GT24344

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24344

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30379950 [Map]; Strand: w
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3469; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -3741; Region: intergenic
    Flanking Genome Sequence: GT24344 - 3-prime edge 
    CGACCGTTAC CGACCGTTAC CGACCGTTAC TAGGAACAAA AAAGGCCGTA 
    CGATTCATGA ACTAGTAAAA GTCTAAAACA TGTGTTGTCT ATTAAATATT 
    AATTATTATA TAATTTCTTG CCTCTTTTTC GAAATGGTCT TTTGGATTTC 
    GTTTTCAATG TCCATGTCCA CTTAATTTTT ATGACCAAGT GTGAAAATCA 
    AAGACTAATC CCAAATTTTA GATTCCATTC TTGCGAATTG TTTTACTTTT 
    CTCCTACTCC TAATTTAGTA GTTAGTACTT CGTTTTTACA TTGGTTGTTG 
    AAAAAGGCTG CATAATAGTT ATACACAATT TTGCTCTATT TATAGTTGTG 
    ATGGAGTATT GAAATACCAT ATACATTTCC TTTTGCAAAA ACAAAATCTA 
    TAAAAACTTC ATTGTGTATT AACATAAAAC AGTAGTGGAA CTCAATTGCA 
    TATGGGGACA TAAATCTAAT GAAAAACTCT TCAACTAATA TACGTTGCCA 
    TCAAAATGTA CTCATATGTG TTCAAATACT ATTATTATAC TCTTACCCAT 
    CAAAGTAACA GTGCGTATCC GTGAATTACA CGTTTTCTTT GACATCTATT 
    TTGTAGAAAA AAATTTTTAT TCCGATGGTT TCAATTTGGC TTTACGTTTT 
    TTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30380042 [Map]; Strand: w
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3561; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -3649; Region: intergenic
    Flanking Genome Sequence: GT24344 - 5-prime edge 
    CTTTACTAAG TTCAATGCAT CCTCTAGTAG ACACCTACTG CTTAACTAAC 
    CAACATAAAA AAATATGATT AATTCTCCCC GAATAGTATT GTTGTGTTAC 
    TTTTACACAA ATTGAAAAAA AAGTAAACGA CAGTTATTAG TTATTTTAAA 
    ACGAATGAAA CATTATGTAA AAATATGTCA AATTAATATG CTTAGTTAAT 
    TAGAGAAAGT CAAGACTTTG CAAAAATGCA TCCAAAATTA AACAAATGTA 
    TACCCGAAAG TTCGAGGGGG AATTAGTTCT GTCACTAAAA TATTCCGTTT 
    AAACTCAAGT CTTATAAAAT GTACGGATAT TATACCTTTT GTTTTCTCGA 
    GCTTATTATA CCTTAAAAAT GTAAATTGGA TGAGGATATT GAGGAAAAAA 
    ATAAAACTTG GAAAGAAATA TTAGTAAGCT TTTTTTAAAA AAAAAAAAAA 
    AAAAATTTTT CAACCCCGAA AAAAAACGGC CCAAAAATTC TTGGGGGGGG 
    GAGGGGGAAA AAAAACCCCC CCCCCCCGGG GGGGGGGGGT GAAATTTTCC 
    CCCACCCCCC GGGGCCCCCG CCAAAAAGGG AAAAATTTTT AAAAAAACGA 
    AAAGAGAAGG GGGTTTTCAA AATGGGTTTT TAAAGTTTTT

AT1G80831.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR