1. Home
  2. Mutant Lines
  3. GT24350

GT24350

CSHL Arabidopsis genetrap mutant lines

Original: GT24350

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24350

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 80848 [Map]; Strand: w
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT24350 - 5-prime edge 
    AGTTATGGAT TACGATTCCT GTTGTCTGAT TCGGGTTGAA CCGGCTCTGT 
    GCCGTTATGG TGTTGACTCC ATTCGGTGGG TTACGTGCAA ATATCCGACA 
    GTTTTGTAAA ACAGCTGCGG CGTTTCCGAA AATGAAGTCA ACGGTTCCGT 
    ATATGTCGCA CTCCCTGAAA AACTGACGAC CAGAGTGCAC GTAGAGTGTG 
    TCTTGATAGC CTTCAATGCT ACATCTGTAA AACACTGACA TGTCTGAATT 
    CGATCTGAGA GCCACCGCCT GATGGTTTTC CGGTCCTGCC GTGTTCCTGA 
    TTGTTATGTC TCGTCCCACG AAACCGTCCC CCTCAGCCAC TGTCATGCAA 
    TATGTTACGT GGCAATAAAA CGAATATATA TAGTGTAAGT TGTTAAGGAG 
    AAATGTCTAA CCAAAAGTGG CAGATTTGTA AGTGGAAAAT CCTCGGCCCT 
    TGCTTTTGTC ACCGGTGATT ATGGTTTTGC CGATACCATC GCCAGTGATC 
    ATGATGTTAT TAAACTTGAT TCCTACATTG ACATATTCCT CGTAAACGCC 
    TTGCTTGACA TGTATGACAT ACCTTGGGCT TCCTTTGGGC CTCTCTCCAG 
    CACCATTCAC GGCCTCTTGG ATAGTTTTGT AGTCCCCGGA ACCATCTTGA 
    GCCAC

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR