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GT24376

CSHL Arabidopsis genetrap mutant lines

Original: GT24376

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24376

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4394421 [Map]; Strand: c
      • AT1G12900.1 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: -21; Region: promoter
      • AT1G12900.2 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: -21; Region: promoter
      • AT1G12900.3 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: -78; Region: promoter
      • AT1G12900.4 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: -27; Region: promoter
    Flanking Genome Sequence: GT24376 - 3-prime edge
    GAGGCAAAGA AGATGAGATT CTGGATAGCT TTGTCATTCA TTTGTATGGT 
    TGTGGTTTTA TCTGTCTTCC CTCTTCACGT TTTCTATGAT TCACACATAT
    TTTTGATTTT CTCACTTGGG CTTCACAAGT GGATGGGCTT CTCCATCATG
    TGGTCACATT TGATCTAGTG ACTCGACGAC ATAGCTTTTC TGACATCTCT
    ATGCTGCAGA TGAAAATCAC TGACACATTA AGAAGTGTGA CCCTTCTTGC
    TCCTTCTTAG CCATTTAAAA GATTACACAT TTTGTCTTTG TAATCTCAAA
    GAAAGATGTG TCATTATGTC TCTTTACCTT TTTGTTTTGC GCATTGACTT
    TATAGAAAGC TATTCCAAGA AATACAATAG GTACTGAGAG GTGTAACTAA
    CTCTAGCAGT CCATAGCTCT AATCAAATAC AAAACTAAAC CTAATCATCC
    ACAATTGAGG TACACACTTC CCATGGATCA TACTGCAAAG ATTGTGCTAC
    AAGAGAAAAA GCAATGAAGC AAAAATCTAA ATCAAAGGAT TATCCTTTCT
    TATCAATCAT ACATCAATAA AAGTCAGTGC TAAGCTTTGC ATCTTGAGTA
    TAGCAACAAG ATCAAACAGA TTCATTAATT CGATTGAAAA CAGTCTTTAC
    ATCTTGAGGA TAGTAACAAG GGTAACGAGA CCCCTAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4394300 [Map]; Strand: c
      • AT1G12900.1 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: 0; Region: exon1 (5UTR)
      • AT1G12900.2 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: 0; Region: exon1 (5UTR)
      • AT1G12900.3 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: 0; Region: exon1 (5UTR)
      • AT1G12900.4 - [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT24376 - 5-prime edge
    CCTCCACTCA GCAATTCATA TTTTCCTATA TTACAACTCT CTGCCTCTTC 
    TGCTTACATC ATACAACAAG CTTCTCTCTC TGGTAGCCAT GGCTTCGGCT
    ACTTTCTCTG TGGCCAAACC ATCTCTTCAG GTTTTGTTTC ATCTTCCTAA
    ACAAATTATC TGATTGCCCT TCACACAAGT TTTATCATCA TCTCATAAAT
    ACTCTCATGT TTTACTTTTT CAGGGTTTTT CTGAGTTCTC AGGACTTCGA
    AACTCCTCTG CTCTTCCCTT TGCCAAGAGA TCTTCTTCCG ATGAGTTTGT
    TTCCTTCGTC AGTTTCCAAA CTTCTGCAGT GAGTTCCTTT TTCACCCACT
    CCTCTCTATT GCTCCTGTGT TATATATCTT ATGGTGCAAT CTTGTAAACT
    CAAGAGCTGT TTCTTGTGTC TAATGCCACC ATTGTAAATC TATCCATGAT
    GAACAAGGCT GCATGGCATG ATCAGCCATG ATTAACCATA TACGTTTTTT
    TTTTCTGTCT CTTTGTTTTA AAAAAAAAAC AATGGTGGAA ACAGGAAAGG
    GGTAACCAAA GCCAAAAAAA AGGGAGCCCT CAATGGGTT

AT1G12900.1

Model type
Protein coding
Short Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Computational Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47; Bacteria - 10700; Metazoa - 2230; Fungi - 2778; Plants - 3753; Viruses - 0; Other Eukaryotes - 5196 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12900.2

Model type
Protein coding
Short Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Computational Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24213 Blast hits to 24212 proteins in 6137 species: Archae - 36; Bacteria - 10763; Metazoa - 2201; Fungi - 2756; Plants - 3727; Viruses - 0; Other Eukaryotes - 4730 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12900.3

Model type
Protein coding
Short Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Computational Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12900.4

Model type
Protein coding
Short Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Computational Description
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1).
Link
InterPro Scan - TAIR