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GT24387

CSHL Arabidopsis genetrap mutant lines

Original: GT24387

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24387

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44379 [Map]; Strand: c
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1182; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 896; Region: intergenic
    Flanking Genome Sequence: GT24387 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC AATCAGATAT GTTATTACAT 
    ACATATCAAT ATTACTTCAT TTTATCTTAA ATTATATAGC TCATGTTTAA 
    TTCTGGAATT GTTTTCATAA CTAAATTTTT TTCGATAAAG TTGTCATTTT 
    AAAATATTTC CTAGAGTTCT AATTAAGTTT AGTGTTGTGT GAATGGAAGA 
    ATTCGACACA TAACTTGCCA AAAATCCGTG CATGTGATTA ATTTGGCAAA 
    GGAAATTAAA GAAAATATCA TTAGATCATG ATTAAAGCTA AGTTTTGCAG 
    CAAAATTATA TATATTGCCG TTTAAAGACT CAATATATTT CTACCTTTTT 
    CGCTAACAAA TTTCATGGAC TCATTTGTGC TAGTTTATAT AAACCTTGTT 
    ATAACCATTT AAATTCGTAT ACGTACGTAC GGAGCAATAC AAGAAACACA 
    TATAAAGCAA AATCCTATAG ACCACAAAAA ATAAAAAAAA TAGTGTGTGG 
    TCAAAATCAT GGTTACTCAA AAAGCAAGAT CAAGAACAAG GGATTAAATT 
    TCTAGGGTTT TTCCTAAGGA CGAAGAAGGA GAGAGACTTT ACAAAATTAG 
    GGCAAAAAAG GAGCGTTGCA CTTTGGTTTG GAAATCATTG CCATAA

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR