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GT24408

CSHL Arabidopsis genetrap mutant lines

Original: GT24408

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24408

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 246238 [Map]; Strand: w
      • AT4G00570.1 - [+] show detail - NAD-dependent malic enzyme 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT24408 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTAA GTAGTAGATT GAAGATTGTC 
    CAATGCAGGT AGACGGGCTA CATTCTGTGA TGTCGATAAT AATGCTAATA 
    ATCTTTGTAT ACGGCAAAGG TATTTTCTTG CTTGTTTTAG GCTTAGAACT 
    TTCCTTGTTA TTGAATTATA TCAATTTACG GTCATATATG AACTTTTGGA 
    TTTACACGAC TGGTTAACAA TTACAGAGAA CAACACAAAA GGAGAGCCTG 
    AAAACGTTGT TGCATTAGCT AAATGGAGGA TGTTGAATAG ATTGCATGAC 
    CGTAATGAGA CTTTGTACTA CCGAGTGAGT CTTTTTGGCT CTAAATACTG 
    TCCCACATTG ACACATCTCT GAAACATCAT AACTCATCTT CTCTGCAGGT 
    TCTTATTGAT AACATCAAAA ATTTTGCCCC CATTATATAC ACTCCTACGG 
    TTGGACTTGT TTGTCAAAAC TATTCTGGTT TGTATAAAAA ACCGAAAGGA 
    ATGTACTTCA GCGCCAAAAA CAAAGGAAAG ATGATGTCTA TGATTTATAA 
    CTGGCCTGCT CCGCAGGTAG ATATGATTGT CATCACTGAT GGTAGCCGTA 
    TTTTGGGCTT AGGAAACCTT GGAGTACAGG GAATTGGAAT TCCTATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 34175 [Map]; Strand: w
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT24408 - 5-prime edge 
    TCTCCTCTCC ATAAGCTAAG CTCTAGAAAC ACCGCCTTTA ACGTCTCGCT 
    GCACCATTTT TCATCTCACT CGACAAGTCG ATCCTCTTGA GTGATTTGAT 
    TTTAGACTTT CTACTTATCA AACTCGAAAG ATGGATTCTG TCCTTGTAGT 
    GGGCATTGCA TCGGTTATTC TCGGTGCGTT GATCGCTGTA CTCTTCTTCG 
    GTAGCTACTT CCGGAAGCGG ACATCGGAGG TGCAATCCAT GGCCAAAGCG 
    GAGCCTCAGG ATCCGATCCG GAATCCAAAG TCGAATCATC CTGCTCCGAA 
    GAAGAATCAT CCCAAATCTC AAGCGTCCGA TAAGGTAAGG TTTTAACTCC 
    ATTTTGTTCC GAGTTTAGGG ATTTCAGATT TGGATATGAG TTGACTTTAA 
    AGCTTTCTCT TCTTCGTTTC TAAATTGCTT GTGGAATGCA AAATCAAAAC 
    AAACGGCATC ATCCTTTAGA TTTAAACACG TTGAAAGGCC ACGGTGATGC 
    TGTTACTGGA CTCTGTTTCT CGTCCGATGG AAAGAGCTTG GCCACAGGTT 
    AAAACCTATA AACACTCCTA CTTAGCTAAT CCCTGTCAAG AAAATATTTT 
    TGCTATTTTA CAATTCTGAT CACATTTGTT CCTGTTTTTG

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00570.1

Model type
Protein coding
Short Description
NAD-dependent malic enzyme 2
Curator Summary
Encodes an NAD-dependent malic enzyme (NAD-ME) that does not act on oxaloacetate, indicating that it belongs to EC 1.1.1.39. It is a member of the beta family of NAD-MEs in plants. It appears to function as a homodimer or as a heterodimer with the alpha-type NAD-ME2 (At2g13560). NAD-ME2 transcript and protein levels are higher during the night than during the day.
Computational Description
NAD-dependent malic enzyme 2 (NAD-ME2); FUNCTIONS IN: in 7 functions; INVOLVED IN: malate metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD-dependent malic enzyme 1 (TAIR:AT2G13560.1); Has 9343 Blast hits to 9326 proteins in 2439 species: Archae - 143; Bacteria - 6323; Metazoa - 607; Fungi - 223; Plants - 463; Viruses - 0; Other Eukaryotes - 1584 (source: NCBI BLink).
Link
InterPro Scan - TAIR