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GT24409

CSHL Arabidopsis genetrap mutant lines

Original: GT24409

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24409

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15105429 [Map]; Strand: c
      • AT2G35950.1 - [+] show detail - embryo sac development arrest 12
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT24409 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTTTGG TTCACCGAAA 
    CGGTAACGTT TTGAAGGAAT CTGTAGGAAC CGGCGTTTTT CACCCTCTTC
    AGCGTCCAAC TTTCAAGACT TTTGACCCTG TGAAGAAGCA TAGTAAGCTA
    CTTCACTTGT CTTCTTCCAA AACCTTCTTT TATGTTTAAA ATAAGGTTTG
    GTTTGGTTTT GTTTTCTTCT CTCTCAACAA TCTTTAGTTA CTGAGACTAG
    CTCTTTGCAT GTTTTAGGTT AGTACACAAA ATGGAAAAAA AATCTGACCT
    TTTTTTGTTT ACTTGTCGAA AGCAAATCAA AGGAATCGGA ATCAAAGTGA
    GAAGGAGTTT ATGACCAAAG AAAAAAGAGG AGTGATGACT TCTACAACGC
    AGGAGCAGCA ACAGAAAGAG GAGTGTCATT ATCATTTGCC TTCAAACATG
    GATTTCTCCA AGGACTGGAC TTTCTGATGG AACAAGTTCA AGTAGTTACT
    AATTATTAGA TCTTTTGGGT ATTAAGTATT AACTAGGAGG TAAATAATAA
    TTAGGGACAA AGTTTGAAGA TGACCAAGTG GATTAAGCTT GATTTCAAGG
    TCTAGATACC TTTTTAGTAT GAACTAGTTT TTTGGTCAAA CAGCTTGTCT
    CTTATCTCAA TTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15091593 [Map]; Strand: c
      • AT2G35940.3 - [+] show detail - BEL1-like homeodomain 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G35940.1 - [+] show detail - BEL1-like homeodomain 1
        Distance: 0; Region: exon3 (CDS)
      • AT2G35940.2 - [+] show detail - BEL1-like homeodomain 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G35945.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24409 - 5-prime edge
    CTCTGCCGGA TCCGACGGTG GTCTTCAAAC GTTGATCCTC ATGAATCCAA 
    CTACTTACGT TCAGTACACC CAACAAGACA ACGACTCGAA CAACAACAAC
    AACAGCAACA ATAGCAACAA CAACAACACA AACACAAACA CAAACAACAA
    CAACAGTAGT TTCGTTTTCC TCGATTCCCA CGCGCCGCAG CCAAACGCGA
    GCCAGCAGTT CGTCGGAATA CCACTCTCAG GTCACGAAGC TGCTTCCATT
    ACAGCCGCCG ACAACATCTC CGTACTTCAC GGTTATCCTC CGCGCGTGCA
    GTACAGTCTC TACGGTAGCC ACCAGGTGGA TCCCACTCAC CAGCAAGCCG
    CGTGTGAGAC GCCACGCGCG CAGAAAGGCC TCTCTTTAAT CCTCTCGTCT
    CAACAGCAGC AGCAACAGCA ACATCATCGA CAACACCAGC CTATTCACGT
    CGGATTCGGG TCCGGACATG GAGAAGATAT CCGG

AT2G35940.1

Model type
Protein coding
Short Description
BEL1-like homeodomain 1
Curator Summary
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational Description
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 71711 Blast hits to 13510 proteins in 414 species: Archae - 28; Bacteria - 75; Metazoa - 3080; Fungi - 2154; Plants - 2539; Viruses - 2; Other Eukaryotes - 63833 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35940.2

Model type
Protein coding
Short Description
BEL1-like homeodomain 1
Curator Summary
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational Description
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 71711 Blast hits to 13510 proteins in 414 species: Archae - 28; Bacteria - 75; Metazoa - 3080; Fungi - 2154; Plants - 2539; Viruses - 2; Other Eukaryotes - 63833 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35940.3

Model type
Protein coding
Short Description
BEL1-like homeodomain 1
Curator Summary
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational Description
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35945.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G35940
Link
InterPro Scan - TAIR

AT2G35950.1

Model type
Protein coding
Short Description
embryo sac development arrest 12
Computational Description
embryo sac development arrest 12 (EDA12); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR